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Current Bioinformatics

Volume 14, 8 Issues, 2019
ISSN: 2212-392X (Online)
ISSN: 1574-8936 (Print)
This journal supports open access

Aims & Scope

Current Bioinformatics aims to publish all the latest and outstanding developments in bioinformatics. Each issue contains a series of timely, in-depth/mini-reviews, research papers and guest edited thematic issues written by leaders in the field, covering a wide range of the integration of biology with computer and information science.

The journal focuses on advances in computational molecular/structural biology, encompassing areas such as computing in biomedicine and genomics, computational proteomics and systems biology, and metabolic pathway engineering. Developments in these fields have direct implications on key issues related to health care, medicine, genetic disorders, development of agricultural products, renewable energy, environmental protection, etc.

Current Bioinformatics is an essential journal for all academic and industrial researchers who want expert knowledge on all major advances in bioinformatics.

Current Bioinformatics

,

Volume 14

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Number 4



Biography



Editorial   Open Access

Entropy Measures for Medical Image Analysis

, 14(4): 280 - 281

Kamalanand Krishnamurthy and Mannar Jawahar Ponnuswamy


DOI: 10.2174/157489361404190327112500


Research Article

Morphological Segmentation Analysis and Texture-based Support Vector Machines Classification on Mice Liver Fibrosis Microscopic Images

, 14(4): 282 - 294

Yu Wang, Fuqian Shi*, Luying Cao, Nilanjan Dey, Qun Wu, Amira Salah Ashour, Robert Simon Sherratt, Venkatesan Rajinikanth and Lijun Wu


DOI: 10.2174/1574893614666190304125221


Research Article

Texture Spectrum Coupled with Entropy and Homogeneity Image Features for Myocardium Muscle Characterization

, 14(4): 295 - 304

Luminita Moraru*, Simona Moldovanu, Anisia-Luiza Culea-Florescu, Dorin Bibicu, Nilanjan Dey, Amira Salah Ashour and Robert Simon Sherratt


DOI: 10.2174/1574893614666181220095343


Research Article



General Review Article



General Research Article



General Research Article



Articles Ahead of Print

PlncRNADB: A Repository of Plant lncRNAs and lncRNA-RBP Protein Interactions


Youhuang Bai, Xiaozhuan Dai, Tiantian Ye, Peijing Zhang, Xu Yan, Xiaonan Gong, Siliang Liang and Ming Chen*


View Abstract


Single-molecule Real-time (SMRT) Isoform Sequencing (Iso-Seq) in Plants: The Status of the Bioinformatics Tools to Unravel the Transcriptome Complexity


Yubang Gao, Feihu Xi, Hangxiao zhang, Xuqing Liu, Huiyuan Wang, Liangzhen zhao, Anireddy S.N. Reddy and Lianfeng Gu*


View Abstract


Systems Biology Approaches Reveal a Multi-stress Responsive WRKY Transcription Factor and Stress Associated Gene Co-expression Networks in Chickpea


Aravind K Kumar *, PR Sabale , KR Soren , PS Shanmugavadivel , S Pallavi , S Rathod, SK Chaturvedi and NP Singh


View Abstract



A Similarity Searching System for Biological Phenotype Images Using Deep Convolutional Encoder-decoder Architecture


Bizhi Wu, Hangxiao Zhang, Limei Lin, Huiyuan Wang, Yubang Gao, Liangzhen Zhao, Yi-Ping Phoebe Chen*, Riqing Chen* and Lianfeng Gu*


View Abstract





Computational Approaches to Predict the Non-canonical DNAs


Nazia Parveen, Amen Shamim, Seunghee Cho and Kyeong Kyu Kim*


View Abstract



Abstracts Ahead of Print

The Role of MicroRNAs in Defense against Viral Phytopathogens


Behzad Hajieghrari, Naser Farrokhi*, Bahram Goliaei and Kaveh Kavousi


View Abstract


Role of phospholipase D inhibitor in regulating expression of senescence-related phospholipase D gene in postharvest longan fruit


Li Li, Jiemin Li, Jian Sun*, Changbao Li, Jinfeng Sheng, Dongning Ling, Xuemei He, Fengjin Zheng, Guoming Liu and Yayuan Tang


View Abstract









Prediction of Protein Ubiquitination Sites in Arabidopsis thaliana


Jiajing Chen, Jianan Zhao, Shiping Yang, Zhen Chen* and Ziding Zhang*


View Abstract


Published Contents

Editor's Choice

Analysis of Single-Cell RNA-seq Data by Clustering Approaches

, 2019; 14(4): 314 - 322

Xiaoshu Zhu, Hong-Dong Li, Lilu Guo, Fang-Xiang Wu and Jianxin Wang*


DOI: 10.2174/1574893614666181120095038








Recent Progress in Long Noncoding RNAs Prediction

, 2018; 13(4): 344 - 351

Yuhua Yao*, Xianhong Li, Lili Geng, Xuying Nan, Zhaohui Qi and Bo Liao*


DOI: 10.2174/1574893612666170905153933





Prediction of Protein-Peptide Interactions with a Nearest Neighbor Algorithm

, 2018; 13(1): 14 - 24

Bi-Qing Li, Yu-Hang Zhang, Mei-Ling Jin, Tao Huang and Yu-Dong Cai*


DOI: 10.2174/1574893611666160711162006



Open Access Articles



Dysfunctional Mechanism of Liver Cancer Mediated by Transcription Factor and Non-coding RNA

, 2019; 14(2): 100 - 107

Wei Zeng, Fang Wang, Yu Ma, Xianchun Liang and Ping Chen*




MGB Block ARMS Real-Time PCR for Diagnosis of CYP2C19 Mutation in a Chinese Population

, 2019; 14: 1 - 9 (E-Pub Ahead of Print)

Xiwen Jiang*, Yue Liu, Taosheng Huang, Xiaoya Zhu and Xiaoxie Xu




Large-scale Investigation of Long Noncoding RNA Secondary Structures in Human and Mouse

, 2018; 13(5): 450 - 460

Xingli Guo, Lin Gao*, Yu Wang, David K.Y. Chiu, Bingbo Wang, Yue Deng and Xiao Wen




Inter-Species/Host-Parasite Protein Interaction Predictions Reviewed

, 2018; 13(4): 396 - 406

Jumoke Soyemi, Itunnuoluwa Isewon, Jelili Oyelade* and Ezekiel Adebiyi




SARELI: Sequence Alignment by Radial Evaluation of Local Interactions

, 2018; 13(3): 290 - 298

Ricardo Ortega, Arturo Chavoya*, Cuauhtemoc Lopez-Martin and Luis Delaye




A Novel Approach based on Bipartite Network to Predict Human Microbe-Disease Associations

, 2018; 13(2): 141 - 148

Lei Wang*, Pengyao Ping, Linai Kuang, Songtao Ye, Faisal Muhammad Buland lqbal and Tingrui Pei






Novel Elements of Bacterial Genomes – Promoter Islands: Intraspecies Polymorphism and Sequence Stability

, 2017; 12(3): 194 - 201

Sergey S. Kiselev, Olga N. Ozoline*, Olga A. Glazunova, Valeriy V. Panyukov and Konstantin S. Shavkunov




Computer Representations of Bioinformatics Models

, 2016; 11(5): 551 - 560

Tomasz Prejzendanc, Szymon Wasik* and Jacek Blazewicz




Recent Advances in Mathematical Modeling and Simulation of DNA Replication Process.

, 2013; 8(5): 591 - 602

Guoli Ji, Yong Zeng, Jinting Guan, Qingshun Q. Li, Congting Ye and Yunlong Liu







Most Cited Articles

Research Article

Nextpresso: Next generation sequencing expression analysis pipeline

, 2018; 13(6): 583-591.

O. Graña*, M. Rubio-Camarillo, F. Fdez-Riverola, D.G. Pisano and D. Glez-Peña


DOI: 10.2174/1574893612666170810153850



Review Article

The advances and challenges of deep learning application in biological big data processing

, 2018; 13(4): 352-359.

Li Peng, Manman Peng*, Bo Liao, Guohua Huang*, Weibiao Li and Dingfeng Xie


DOI: 10.2174/1574893612666170707095707


Research Article

Prediction of protein S-sulfenylation sites using a deep belief network

, 2018; 13(5): 461-467.

Lulu Nie, Lei Deng*, Chao Fan, Weihua Zhan and Yongjun Tang


DOI: 10.2174/1574893612666171122152208


Review Article

Recent progress in long noncoding RNAs prediction

, 2018; 13(4): 344-351.

Yuhua Yao*, Xianhong Li, Lili Geng, Xuying Nan, Zhaohui Qi and Bo Liao*


DOI: 10.2174/1574893612666170905153933




Research Article

Low rank representation and its application in bioinformatics

, 2018; 13(5): 508-517.

Yuan You, Hongmin Cai* and Jiazhou Chen


DOI: 10.2174/1574893612666171121155347


Research Article

Extracting diagnostic knowledge from medline plus: A comparison between metamap and cTAKES approaches

, 2018; 13(6): 573-582.

Alejandro Rodríguez-González*, Roberto Costumero, Marcos Martinez-Romero, Mark D. Wilkinson and Ernestina Menasalvas-Ruiz


DOI: 10.2174/1574893612666170727094502


Review Article

A review of biological image analysis

, 2018; 13(4): 337-343.

Weiyang Chen*, Weiwei Li, Xiangjun Dong and Jialun Pei


DOI: 10.2174/1574893612666170718153316



Review Article

A review of computational approaches to predict gene functions

, 2018; 13(4): 373-386.

Swee Kuan Loh, Swee Thing Low, Lian En Chai , Weng Howe Chan, Mohd Saberi Mohamad*, Safaai Deris, Zuwairie Ibrahim , Shahreen Kasim, Zuraini Ali Shah, Hamimah Mohd Jamil , Zalmiyah Zakariaa and Suhaimi Napis *


DOI: 10.2174/1574893612666171002113742



Research Article

Drug and nondrug classification based on deep learning with various feature selection strategies

, 2018; 13(3): 253-259.

Long Yu, Xia Sun, Shengwei Tian*, Xinyu Shi and Yilin Yan


DOI: 10.2174/1574893612666170125124538


Research Article

A novel approach based on bipartite network to predict human microbe-disease associations

, 1 April 2018; 13(2): 141-148.

Lei Wang*, Pengyao Ping, Linai Kuang, Songtao Ye, Faisal Muhammad Buland lqbal and Tingrui Pei


DOI: 10.2174/1574893612666170911143601



Most Accessed Articles

Morphological Segmentation Analysis and Texture-based Support Vector Machines Classification on Mice Liver Fibrosis Microscopic Images

, 2019; 14(4): 282-294.

Yu Wang, Fuqian Shi*, Luying Cao, Nilanjan Dey, Qun Wu, Amira Salah Ashour, Robert Simon Sherratt, Venkatesan Rajinikanth and Lijun Wu


DOI: 10.2174/1574893614666190304125221




Analysis of Single-Cell RNA-seq Data by Clustering Approaches

, 2019; 14(4): 314-322.

Xiaoshu Zhu, Hong-Dong Li, Lilu Guo, Fang-Xiang Wu and Jianxin Wang*


DOI: 10.2174/1574893614666181120095038


Texture Spectrum Coupled with Entropy and Homogeneity Image Features for Myocardium Muscle Characterization

, 2019; 14(4): 295-304.

Luminita Moraru*, Simona Moldovanu, Anisia-Luiza Culea-Florescu, Dorin Bibicu, Nilanjan Dey, Amira Salah Ashour and Robert Simon Sherratt


DOI: 10.2174/1574893614666181220095343



Function Analysis of Human Protein Interactions Based on a Novel Minimal Loop Algorithm

, 2019; 14(2): 164-173.

Mingyang Jiang, Zhili Pei*, Xiaojing Fan, Jingqing Jiang, Qinghu Wang and Zhifeng Zhang


DOI: 10.2174/1574893613666180906103946





Editor-in-Chief

Quan Zou
Tianjin University
Tianjin
China

Journal History

Current Bioinformatics was launched in 2006. Dr. Quan Zou serves as the Editor-in-Chief of the journal.
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