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Plant Bioinformatics: from genome to phenome


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Application of Novel Computational Methods in Molecular Biology, Biomedicine and Biopharmacy


Current Bioinformatics, Volume 11, Number 1
Guest Editor(s): Yudong Cai Cai

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Current Bioinformatics

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Volume 13

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Number 5



Editorial   Open Access



Research Article

Group-sparse Modeling Drug-kinase Networks for Predicting Combinatorial Drug Sensitivity in Cancer Cells

, 13(5): 437 - 443

Hui Liu, Libo Luo, Zhanzhan Cheng, Jianjiang Sun, Jihong Guan, Jie Zheng* and Shuigeng Zhou*


DOI: 10.2174/1574893613666180118104250




Research Article



Research Article   Open Access

Large-scale Investigation of Long Noncoding RNA Secondary Structures in Human and Mouse

, 13(5): 450 - 460

Xingli Guo, Lin Gao*, Yu Wang, David K.Y. Chiu, Bingbo Wang, Yue Deng and Xiao Wen


DOI: 10.2174/1574893613666180118111019




Research Article



Research Article



Research Article

MyPhi: Efficient Levenshtein Distance Computation on Xeon Phi Based Architectures

, 13(5): 479 - 486

Yuandong Chan , Kai Xu , Haidong Lan , Bertil Schmidt , Shaoliang Peng * and Weiguo Liu *


DOI: 10.2174/1574893612666171122150933




Research Article



Articles Ahead of Print





The Influence of Memory-Aware Computation on Distributed BLAST


Majid Hajibaba, Mohsen Sharifi and Saeid Gorgin*


View Abstract


A Novel Adaptive PET/CT Image Fusion Algorithm


Kai-jian Xia*, Jian-qiang Wang and Jian Cai


View Abstract


Clustering Count-Based RNA Methylation Data Using a Nonparametric Generative Model


Lin Zhang*, Yanling He, Huaizhi Wang, Hui Liu, Yufei Huang, Xuesong Wang and Jia Meng


View Abstract


HCVS: Pinpointing Chromatin States Through Hierarchical Clustering and Visualization Scheme


Nighat Noureen*, Sahar Fazal, Muhammad Abdul Qadir and Muhammad Tanvir Afzal


View Abstract


Mining Gene Expression Profile with Missing Values: An Integration of Kernel PCA and Robust Singular Values Decomposition


Md. Saimul Islam, Md. Aminul Hoque*, Md. Sahidul Islam, Mohammad Ali, Md. Bipul Hossen, Md. Binyamin, Amir Feisal Merican, Kohei Akazawa, Nishith Kumar and Masahiro Sugimoto


View Abstract



Editor's Choice


Recent Progress in Long Noncoding RNAs Prediction

, 2018; 13(4): 344 - 351

Yuhua Yao*, Xianhong Li, Lili Geng, Xuying Nan, Zhaohui Qi and Bo Liao*


DOI: 10.2174/1574893612666170905153933





Prediction of Protein-Peptide Interactions with a Nearest Neighbor Algorithm

, 2018; 13(1): 14 - 24

Bi-Qing Li, Yu-Hang Zhang, Mei-Ling Jin, Tao Huang and Yu-Dong Cai*


DOI: 10.2174/1574893611666160711162006








Open Access Articles

Large-scale Investigation of Long Noncoding RNA Secondary Structures in Human and Mouse

, 2018; 13(5): 450 - 460

Xingli Guo, Lin Gao*, Yu Wang, David K.Y. Chiu, Bingbo Wang, Yue Deng and Xiao Wen




Inter-Species/Host-Parasite Protein Interaction Predictions Reviewed

, 2018; 13(4): 396 - 406

Jumoke Soyemi, Itunnuoluwa Isewon, Jelili Oyelade* and Ezekiel Adebiyi




SARELI: Sequence Alignment by Radial Evaluation of Local Interactions

, 2018; 13(3): 290 - 298

Ricardo Ortega, Arturo Chavoya*, Cuauhtemoc Lopez-Martin and Luis Delaye




A Novel Approach based on Bipartite Network to Predict Human Microbe-Disease Associations

, 2018; 13(2): 141 - 148

Lei Wang*, Pengyao Ping, Linai Kuang, Songtao Ye, Faisal Muhammad Buland lqbal and Tingrui Pei







Novel Elements of Bacterial Genomes – Promoter Islands: Intraspecies Polymorphism and Sequence Stability

, 2017; 12(3): 194 - 201

Sergey S. Kiselev, Olga N. Ozoline*, Olga A. Glazunova, Valeriy V. Panyukov and Konstantin S. Shavkunov




Overcoming the Limitation of GWAS Platforms Using Systems Biology Approach

, 2017; 12(2): 156 - 170

Budheswar Dehury, Santosh K. Behera and Sapna Negi*




Computer Representations of Bioinformatics Models

, 2016; 11(5): 551 - 560

Tomasz Prejzendanc, Szymon Wasik* and Jacek Blazewicz





Recent Advances in Mathematical Modeling and Simulation of DNA Replication Process.

, 2013; 8(5): 591 - 602

Guoli Ji, Yong Zeng, Jinting Guan, Qingshun Q. Li, Congting Ye and Yunlong Liu






Review of Stochastic Stability and Analysis Tumor-Immune Systems

, 2013; 8(4): 390 - 400

Chi s Oana, Opri s Dumitru and Concu Riccardo





Most Cited Articles

Application of the Shortest Path Algorithm for the Discovery of Breast Cancer-Related Genes

, 2016; 11(1): 51-58.

Lei Chen, Zhi Hao Xing, Tao Huang, Yang Shu, GuoHua Huang and Hai-Peng Li*


DOI: 10.2174/1574893611666151119220024



Prioritizing Disease Genes by Using Search Engine Algorithm

, 2016; 11(2): 195-202.

Min Li, Ruiqing Zheng, Qi Li, Jianxin Wang*, Fang-Xiang Wu and Zhuohua Zhang


DOI: 10.2174/1574893611666160125220905


Prediction of Linear B-Cell Epitopes with mRMR Feature Selection and Analysis

, 2016; 11(1): 22-31.

Bi-Qing Li, Lu-Lu Zheng, Kai-Yan Feng, Le-Le Hu, Guo-Hua Huang* and Lei Chen*


DOI: 10.2174/1574893611666151119215131



Computer Representations of Bioinformatics Models

, 2016; 11(5): 551-560.

Tomasz Prejzendanc, Szymon Wasik* and Jacek Blazewicz


DOI: 10.2174/1574893610666150928193510


Reconstruction of the Network of Experimentally Validated AMP-Drug Combinations Against Pseudomonas aeruginosa Infections

, 2016; 11(5): 523-530.

Paula Jorge, Martín Pérez-Pérez, Gael Pérez Rodríguez, Florentino Fdez-Riverola, Maria Olivia Pereira and Anália Lourenço*


DOI: 10.2174/1574893611666160617093955





Most Accessed Articles

A Novel Approach based on Bipartite Network to Predict Human Microbe-Disease Associations

, 2018; 13(2): 141-148.

Lei Wang*, Pengyao Ping, Linai Kuang, Songtao Ye, Faisal Muhammad Buland lqbal and Tingrui Pei


DOI: 10.2174/1574893612666170911143601


Inter-Species/Host-Parasite Protein Interaction Predictions Reviewed

, 2018; 13(4): 396-406.

Jumoke Soyemi, Itunnuoluwa Isewon, Jelili Oyelade* and Ezekiel Adebiyi


DOI: 10.2174/1574893613666180108155851




Cancer Diagnosis Through IsomiR Expression with Machine Learning Method

, 2018; 13(1): 57-63.

Zhijun Liao, Dapeng Li, Xinrui Wang, Lisheng Li and Quan Zou*


DOI: 10.2174/1574893611666160609081155


Application of the Shortest Path Algorithm for the Discovery of Breast Cancer-Related Genes

, 2016; 11(1): 51-58.

Lei Chen, Zhi Hao Xing, Tao Huang, Yang Shu, GuoHua Huang and Hai-Peng Li*


DOI: 10.2174/1574893611666151119220024



Large-scale Investigation of Long Noncoding RNA Secondary Structures in Human and Mouse

, 2018; 13(5): 450-460.

Xingli Guo, Lin Gao*, Yu Wang, David K.Y. Chiu, Bingbo Wang, Yue Deng and Xiao Wen


DOI: 10.2174/1574893613666180118111019



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