Title:Automated Skull and Cavity Segmentation from Ultra Short TE Sequence Images
Volume: 9
Author(s): Mohamad Habes, Elena Rota Kops, Jeanette Bahr, Jens-Peter Kuhn, Wolfgang Hoffmann, Hans-Gerd Lipinski and Hans Herzog
Affiliation:
Keywords:
Skull segmentation, UTE, Support vector machine, Attenuation correction, PET/MR, MRI.
Abstract: In order to achieve an accurate attenuation correction in brain PET images acquired by hybrid PET/MR scanners,
it is mandatory to delineate cortical bone and cavities in the MR images. Automated segmentation of the anatomical
Ultra short echo time (UTE) MR images into different regions allows to assign them to the corresponding attenuation coefficients.
The UTE sequence yields two components obtained by echo times TE=0.07 ms and TE=2.46 ms.
UTE images were first normalized by means of a scatterplot-based normalization technique, in which the scatterplot of a
given scan is fitted into that of reference's. Second, a correction mask was generated to reduce the problem of the head
edges resulting in the first component. Third, the fully automatic virtual extraction was realized by developing two methods:
the two-class Support Vector Machine (C SVM) -based method and the single-class Support Vector Machine (S
SVM)-based method using different kernels. Four datasets were evaluated with the corresponding registered CT scans and
with an expert manual segmentation of the cavities.
The C SVM-based segmentation of the skull using the RBF kernel reached a Dice coefficient (D) value of 0.83±0.042
(mean ± SD). The S SVM-based segmentation of cavities using the RBF kernel attained a D value of 0.73±0.02. Based on
the present results, the following conclusions can be drawn: First with our methods, the fully automatic segmentation of
cortical bone and cavities reaches good results. Second, intensity normalization enables the development of the S SVMbased
method for segmentation of cortical bone and cavities.
