Title:Identification of Hub Genes and Biomarkers between Hyperandrogen and
Normoandrogen Polycystic Ovary Syndrome by Bioinformatics Analysis
Volume: 26
Issue: 1
Author(s): Tianwei Zhang, Yang Liu, Xiaodong Li*Baoshan Hu*
Affiliation:
- Department of Obstetrics and Gynecology, The First Affiliated Hospital of
Xiamen University, School of Medicine, Xiamen University, Xiamen, Fujian 361003, P.R. China
- Department of
Orthopedics, The First Affiliated Hospital of Xiamen University, School of Medicine, Xiamen University, Xiamen,
Fujian 361003, P.R. China
Keywords:
PCOS, normoandrogen, hyperandrogen, hub gene, biomarker, GEO.
Abstract:
Background: The common and divergent genetic mechanisms of hyperandrogen (HA)
and normoandrogen (NA) polycystic ovary syndrome (PCOS) are currently unknown.
Objective: This study aimed to explore the hub genes and potential mechanisms of HA and NA
PCOS through bioinformatics analysis.
Methods: The GSE137684 dataset was downloaded from the Gene Expression Omnibus (GEO)
database. The co-expressed genes and differentially expressed genes (DEGs) between HA and NA
PCOS samples were functionally annotated by gene ontology (GO) and Kyoto Encyclopedia of
Genes and Genomes (KEGG) enrichment analyses. The protein-protein interaction (PPI) network
of the DEGs was constructed and visualized using STRING and Cytoscape, respectively, and the
hub genes were screened using the Cytohubba plug-in. The transcription factors (TFs) of these hub
genes were identified with the JASPAR database, and the hub gene-TF regulatory network was
constructed.
Results: A total of 327 DEGs, including 191 upregulated and 136 downregulated genes, were identified
in HA PCOS relative to NA PCOS. Ten hub genes were screened, of which MYC, CAV1,
and HGF were mainly enriched in the Proteoglycans in the cancer pathway. In addition, 47 TFs
were identified that were found to be involved in the regulation of hub genes.
Conclusion: MYC, CAV1, and HGF are potential diagnostic biomarkers and therapeutic targets
for HA PCOS.
