Contents

Protein & Peptide Letters, Volume 20 - Number 3

Editorial

Editorial [Hot Topic: The Application of Systems Biology and Bioinformatics Methods in Proteomics, Transcriptomics and Metabolomics (PART II)]

, 20(3): 241 - 242

Yu-Dong Cai


DOI: 10.2174/0929866511320030001




A Sequence-based Approach for Predicting Protein Disordered Regions

, 20(3): 243 - 248

Tao Huang, Zhi-Song He, Wei-Ren Cui, Yu-Dong Cai, Xiao-He Shi, Le-Le Hu and Kuo-Chen Chou


DOI: 10.2174/0929866511320030002




A Protein Block Based Fold Recognition Method for the Annotation of Twilight Zone Sequences

, 20(3): 249 - 254

V. Suresh, K. Ganesan and S. Parthasarathy


DOI: 10.2174/0929866511320030003




Prediction of Turnover Number of Cellulose 1,4-Beta-Cellobiosidase

, 20(3): 255 - 264

Shaomin Yan and Guang Wu


DOI: 10.2174/0929866511320030004




Computational Studies on Enzyme-Substrate Complexes of Methanogenesis for Revealing their Substrate Binding Affinities to Direct the Reverse Reactions

, 20(3): 265 - 278

Chellapandi P.


DOI: 10.2174/0929866511320030005




In Silico Prediction of Cytochrome P450-Mediated Site of Metabolism (SOM)

, 20(3): 279 - 289

Xian Liu, Qiancheng Shen, Jing Li, Shanshan Li, Cheng Luo, Weiliang Zhu, Xiaomin Luo, Mingyue Zheng and Hualiang Jiang


DOI: 10.2174/0929866511320030006




HIV-1 Protease Cleavage Site Prediction Based on Two-Stage Feature Selection Method

, 20(3): 290 - 298

Bing Niu, Xiao-Cheng Yuan, Preston Roeper, Qiang Su, Chun-Rong Peng, Jing-Yuan Yin, Juan Ding, HaiPeng Li and Wen-Cong Lu


DOI: 10.2174/0929866511320030007




FRKAS: Knowledge Acquisition Using a Fuzzy Rule Base Approach to Insight of DNA-Binding Domains/Proteins

, 20(3): 299 - 308

Hui-Ling Huang, Fang-Lin Chang, Shinn-Jang Ho, Li-Sun Shu, Wen-Lin Huang and Shinn-Ying Ho


DOI: 10.2174/0929866511320030008




Virus-ECC-mPLoc: A Multi-Label Predictor for Predicting the Subcellular Localization of Virus Proteins with Both Single and Multiple Sites Based on a General Form of Chou's Pseudo Amino Acid Composition

, 20(3): 309 - 317

Xiao Wang, Guo-Zheng Li and Wen-Cong Lu


DOI: 10.2174/0929866511320030009




Using WPNNA Classifier in Ubiquitination Site Prediction Based on Hybrid Features

, 20(3): 318 - 323

Kai-Yan Feng, Tao Huang, Kai-Rui Feng and Xiao-Jun Liu


DOI: 10.2174/0929866511320030010




Inter- and Intra-Chain Disulfide Bond Prediction Based on Optimal Feature Selection

, 20(3): 324 - 335

Shen Niu, Tao Huang, Kai-Yan Feng, Zhisong He, Weiren Cui, Lei Gu, Haipeng Li, Yu-Dong Cai and Yixue Li


DOI: 10.2174/0929866511320030011




Prediction of Protein-protein Interactions Based on Feature Selection and Data Balancing

, 20(3): 336 - 345

Liang Liu, Wen-Cong Lu, Yu-Dong Cai, Kai-Yan Feng, Chunrong Peng and Yubei Zhu


DOI: 10.2174/0929866511320030012




Computational Methods for DNA-binding Protein and Binding Residue Prediction

, 20(3): 346 - 351

Yao Lu, Xiang Wang, Xuesong Chen and Guijun Zhao


DOI: 10.2174/0929866511320030013




MicroRNA Mediated Network and DNA Methylation in Colorectal Cancer

, 20(3): 352 - 363

Bi-Qing Li, Hui Yu, Zhen Wang, Guo-Hui Ding and Lei Liu


DOI: 10.2174/0929866511320030014




A Two-step Similarity-based Method for Prediction of Drug’s Target Group

, 20(3): 364 - 370

Lei Chen and Wei-Ming Zeng


DOI: 10.2174/0929866511320030015




Meta Genome-wide Network from Functional Linkages of Genes in Human Gut Microbial Ecosystems

, 20(3): 371 - 378

Yan ji, Yixiang Shi, Chuan Wang, Jianliang Dai and Yixue Li


DOI: 10.2174/0929866511320030016




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