Open Access Articles

Glycan Phosphorylases in Multi-Enzyme Synthetic Processes

, 2017; 24(8): 696 - 709

Giulia Pergolizzi, Sakonwan Kuhaudomlarp, Eeshan Kalita and Robert A. Field*




Therapy-Related Changes in the Serum Proteome Patterns of Early Stage Breast Cancer Patients with Different Outcomes

, 2017; 24(1): 37 - 45

Anna Walaszczyk, Monika Pietrowska, Anna Wojakowska, Agata Abramowicz, Aleksandra Chmura, Barbara Maslyk, Pawel Rodziewicz, Joanna Polanska, Katarzyna Behrendt, Elzbieta Nowicka, Rafal Tarnawski and Piotr Widlak




Cell-Free Technologies for Proteomics and Protein Engineering

, 2016; 23(9): 819 - 827

Hiroyuki Ohashi and Etsuko Miyamoto-Sato




The Influence of Ionizing Radiation on Exosome Composition, Secretion and Intercellular Communication

, 2016; 23(7): 656 - 663

Karol Jelonek, Piotr Widlak and Monika Pietrowska




Kinetics for Zinc Ion Induced Sepia Pharaonis Arginine Kinase Inactivation and Aggregation

, 2016; 23(6): 508 - 517

Yue-Xiu Si, Jinhyuk Lee, Juan-Ge Cheng, Shang-Jun Yin, Yong-Doo Park, Guo-Ying Qian and Xia-Min Jiang




Microfluidic approaches to synchrotron radiation-based Fourier transform infrared (SR-FTIR) spectral microscopy of living biosystems

, 2016; 23(3): 273 - 282

Kevin Loutherback, Giovanni Birarda, Liang Chen and Hoi-Ying N. Holman




The Relationship between B-cell Epitope and Mimotope Sequences

, 2016; 23(2): 132 - 141

Chunhua Zhang, Yunyun Li, Weina Tang, Zhiguo Zhou, Pingping Sun and Zhiqiang Ma




Exploring Interaction of TNF and Orthopoxviral CrmB Protein by Surface Plasmon Resonance and Free Energy Calculation

, 2014; 21(12): 1273 - 1281

Nikita V. Ivanisenko, Tatiana V. Tregubchak, Olga V. Saik, Vladimir A. Ivanisenko and Sergei N. Shchelkunov




Bioinformatic Screening of Autoimmune Disease Genes and Protein Structure Prediction with FAMS for Drug Discovery

, 2014; 21(8): 828 - 839

Shigeharu Ishida, Hideaki Umeyama, Mitsuo Iwadate and Y-h. Taguchi




Protein-protein Interaction Network Prediction by Using Rigid-Body Docking Tools: Application to Bacterial Chemotaxis

, 2014; 21(8): 790 - 798

Yuri Matsuzaki, Masahito Ohue, Nobuyuki Uchikoga and Yutaka Akiyama




MEGADOCK: An All-to-All Protein-Protein Interaction Prediction System Using Tertiary Structure Data

, 2014; 21(8): 766 - 778

Masahito Ohue, Yuri Matsuzaki, Nobuyuki Uchikoga, Takashi Ishida and Yutaka Akiyama




pH-dependent Activities and Structural Stability of Loop-2-anchoring Helix of RadA Recombinase from Methanococcus voltae

, 2014; 21(7): 679 - 687

D. E. C. S. Rao and Yu Luo




Heat Shock Protein 40-Gok1 Isolation from Toxoplasma gondii RH Strain

, 2013; 20(12): 1294 - 1301

Kübra A. Coskun, Aykut Özgür, Begüm Otag, Mesut Mungan and Yusuf Tutar




Prediction of Cancer Rescue p53 Mutants In Silico Using Naïve Bayes Learning Methodology

, 2013; 20(11): 1280 - 1291

R. Geetha Ramani and Shomona Gracia Jacob




Aqueous Microwave-Assisted Solid-Phase Peptide Synthesis Using Fmoc Strategy. II. Racemization Studies and Water Based Synthesis of Cysteine- Containing Peptides

, 2013; 20(10): 1122 - 1128

Keiko Hojo, Natsuki Shinozaki, Asaki Hara, Mare Onishi, Yoshinobu Fukumori and Hideki Ichikawa




Novel Inhibitory Activity for Serine Protease Inhibitor Kazal Type-3 (Spink3) on Human Recombinant Kallikreins

, 2013; 20(10): 1098 - 1107

Diego Magno Assis, Lucia Zalazar, Maria Aparecida Juliano, Rosana De Castro and Andreina Cesari




The Anti-fibrotic Hormone Relaxin is not Reno-protective, Despite Being Active, in an Experimental Model of Type 1 Diabetes

, 2013; 20(9): 1029 - 1038

Su Ee Wong, Chrishan S. Samuel, Darren J. Kelly, Yuan Zhang, Gavin J. Becker and Tim D. Hewitson




Structure-Based Prediction of Domain-Peptide Binding Affinity by Dissecting Residue Interaction Profile at Complex Interface: A Case Study on CAL PDZ Domain

, 2013; 20(9): 1018 - 1028

Rongzhong Jin, Yili Ma, Lifeng Qin and Zhong Ni




Amyloid Fiber Formation by Synthetic Peptides Derived from the Sequence of the Protein CsgA of Escherichia coli

, 2013; 20(8): 942 - 946

Pierre Lembre, Charlotte Vendrely and Patrick Di Martino




W-F Substitutions in Apomyoglobin Increase the Local Flexibility of the N-terminal Region Causing Amyloid Aggregation: A H/D Exchange Study

, 2013; 20(8): 898 - 904

Giuseppe Infusini, Clara Iannuzzi, Silvia Vilasi, Rosa Maritato, Leila Birolo, Daniela Pagnozzi, Piero Pucci, Gaetano Irace and Ivana Sirangelo




Prediction of Essential Proteins in Prokaryotes by Incorporating Various Physico-chemical Features into the General form of Chou’s Pseudo Amino Acid Composition

, 2013; 20(7): 781 - 795

Aditya Narayan Sarangi, Mohtashim Lohani and Rakesh Aggarwal




Sequence-specific 1H-NMR Assignment and Determination of the Secondary Structure of Hainantoxin-III from the Spider Ornithoctonus hainana

, 2013; 20(7): 761 - 766

Zhonghua Liu, Qi Zhu, Weijun Hu and Songping Liang




Invertebrate FMRFamide Related Peptides

, 2013; 20(6): 647 - 670

Kevin G. Krajniak




The Expression and Induction of Heat Shock Proteins in Molluscs

, 2013; 20(5): 602 - 606

Dongwu Liu and Zhiwei Chen




Characterization and Decolorization Applicability of Xerogel Matrix Immobilized Manganese Peroxidase Produced from Trametes versicolor IBL-04

, 2013; 20(5): 591 - 600

Hafiz Muhammad Nasir Iqbal and Muhammad Asgher




Type I Interferons: Ancient Peptides with Still Under-Discovered Anti-Cancer Properties

, 2013; 20(4): 412 - 423

Michele Caraglia, Alessandra Dicitore, Monica Marra, Sara Castiglioni, Luca Persani, Pasquale Sperlongano, Pierosandro Tagliaferri, Alberto Abbruzzese and Giovanni Vitale




Red Blood Cell-Encapsulated L-Asparaginase: Potential Therapy of Patients with Asparagine Synthetase Deficient Acute Myeloid Leukemia

, 2013; 20(4): 392 - 402

Vaidehi Agrawal, Jung Hee Woo, Gautham Borthakur, Hagop Kantarjian and Arthur E. Frankel




Virus-ECC-mPLoc: A Multi-Label Predictor for Predicting the Subcellular Localization of Virus Proteins with Both Single and Multiple Sites Based on a General Form of Chou's Pseudo Amino Acid Composition

, 2013; 20(3): 309 - 317

Xiao Wang, Guo-Zheng Li and Wen-Cong Lu




A Sequence-based Approach for Predicting Protein Disordered Regions

, 2013; 20(3): 243 - 248

Tao Huang, Zhi-Song He, Wei-Ren Cui, Yu-Dong Cai, Xiao-He Shi, Le-Le Hu and Kuo-Chen Chou




Predicting Antibacterial Peptides by the Concept of Chou’s Pseudo-amino Acid Composition and Machine Learning Methods

, 2013; 20(2): 180 - 186

Maede Khosravian, Fateme Kazemi Faramarzi, Majid Mohammad Beigi, Mandana Behbahani and Hassan Mohabatkar




Identification of a Novel Antifungal Peptide with Chitin-Binding Property from Marine Metagenome

, 2012; 19(12): 1289 - 1296

Muthuirulan Pushpanathan, Jeyaprakash Rajendhran, Sathyanarayanan Jayashree, Balakrishnan Sundarakrishnan, Seetharaman Jayachandran and Paramasamy Gunasekaran




Predicting the Metabolic Pathways of Small Molecules Based on Their Physicochemical Properties

, 2012; 19(12): 1250 - 1256

Chun-Rong Peng, Wen-Cong Lu, Bing Niu, Min-Jie Li, Xiao-YanYang and Mi-Lin Wu




Predicting Viral Protein Subcellular Localization with Chou's Pseudo Amino Acid Composition and Imbalance-Weighted Multi-Label K-Nearest Neighbor Algorithm

, 2012; 19(11): 1163 - 1169

Jun-Zhe Cao, Wen-Qi Liu and Hong Gu




Incorporating Secondary Features into the General form of Chou's PseAAC for Predicting Protein Structural Class

, 2012; 19(11): 1133 - 1138

Bo Liao, Qilin Xiang and Dachao Li




Hydropathic Self-Organized Criticality: A Magic Wand for Protein Physics

, 2012; 19(10): 1089 - 1093

J.C. Phillips




pH-sensitive Self-associations of the N-terminal Domain of NBCe1-A Suggest a Compact Conformation under Acidic Intracellular Conditions

, 2012; 19(10): 1054 - 1063

Harindarpal S. Gill




Resuscitation-promoting Factors (Rpf): In Search of Inhibitors

, 2012; 19(10): 1026 - 1034

Arseny S. Kaprelyants, Galina V. Mukamolova, Alessia Ruggiero, Vadim A. Makarov, Galina R. Demina, Margarita O. Shleeva, Vasilii D. Potapov and Pavel A. Shramko




Secreted Nucleobindin-2 Inhibits 3T3-L1 Adipocyte Differentiation

, 2012; 19(9): 997 - 1004

Yuko Tagaya, Aya Osaki, Atsuko Miura, Shuichi Okada, Kihachi Ohshima, Koshi Hashimoto, Masanobu Yamada, Tetsurou Satoh, Hiroyuki Shimizu and Masatomo Mori




Predicting Protein Solubility by the General Form of Chou’s Pseudo Amino Acid Composition: Approached from Chaos Game Representation and Fractal Dimension

, 2012; 19(9): 940 - 948

Xiao-Hui Niu, Xue-Hai Hu, Feng Shi and Jing-Bo Xia




Prediction of Human Genes’ Regulatory Functions Based on Proteinprotein Interaction Network

, 2012; 19(9): 910 - 916

Peng Gao, Qing-Ping Wang, Lei Chen and Tao Huang




Identifying GPCRs and their Types with Chou’s Pseudo Amino Acid Composition: An Approach from Multi-scale Energy Representation and Position Specific Scoring Matrix

, 2012; 19(8): 890 - 903

Zia-ur-Rehman and Asifullah Khan




Effect of the Compatible Solute Ectoine on the Stability of the Membrane Proteins

, 2012; 19(8): 791 - 794

Arpita Roychoudhury, Dieter Haussinger and Filipp Oesterhelt




Enhanced Crystallizability by Protein Engineering Approaches: A General Overview

, 2012; 19(7): 732 - 742

Alessia Ruggiero, Giovanni Smaldone, Flavia Squeglia and Rita Berisio




Bioactive Peptides from Marine Organisms: A Short Overview

, 2012; 19(7): 700 - 707

Fernando Lazcano-Perez, Sergio A. Roman-Gonzalez, Nuria Sanchez-Puig and Roberto Arreguin- Espinosa




Comparison of the Neutrophil Proteome in Trauma Patients and Normal Controls

, 2012; 19(6): 663 - 672

Liz M.B. Teles, Elaine N. Aquino, Anne C.D. Neves, Carlos H.S. Garcia, Peter Roepstorff, Belchor Fontes, Mariana S. Castro and Wagner Fontes




Using Protein-protein Interaction Network Information to Predict the Subcellular Locations of Proteins in Budding Yeast

, 2012; 19(6): 644 - 651

Le-Le Hu, Kai-Yan Feng, Yu-Dong Cai and Kuo-Chen Chou




Mechanism of Action and Relationship Between Structure and Biological Activity of Ctx-Ha: A New Ceratotoxin-like Peptide from Hypsiboas albopunctatus

, 2012; 19(6): 596 - 603

Graziely Ferreira Cespedes, Esteban Nicolas Lorenzon, Eduardo Festozo Vicente, Maria Jose Soares Mendes-Giannini, Wagner Fontes, Mariana de Souza Castro and Eduardo Maffud Cilli




Predicting Protein-Protein Interactions by Combing Various Sequence- Derived Features into the General Form of Chou’s Pseudo Amino Acid Composition

, 2012; 19(5): 492 - 500

Xiao-Wei Zhao, Zhi-Qiang Ma and Ming-Hao Yin




Dual-Layer Wavelet SVM for Predicting Protein Structural Class Via the General Form of Chou’s Pseudo Amino Acid Composition

, 2012; 19(4): 422 - 429

Chao Chen, Zhi-Bin Shen and Xiao-Yong Zou




Discriminating Outer Membrane Proteins with Fuzzy K-Nearest Neighbor Algorithms Based on the General Form of Chou’s PseAAC

, 2012; 19(4): 411 - 421

Maqsood Hayat and Asifullah Khan




Functional Investigation of Conserved Membrane-Embedded Glutamate Residues in the Proton-Coupled Peptide Transporter YjdL

, 2012; 19(3): 282 - 287

Johanne M. Jensen, Heidi A. Ernst, Xiaole Wang, Helle Hald, Amarah C. Ditta, Fouzia Ismat, Moazur Rahman and Osman Mirza




Extracellular Sunflower Proteins: Evidence on Non-classical Secretion of a Jacalin-Related Lectin

, 2012; 19(3): 270 - 276

Marcela Pinedo, Mariana Regente, Mercedes Elizalde, Ivana Y. Quiroga, Luciana A. Pagnussat, Jesus Jorrin-Novo, Ana Maldonado and Laura de la Canal




Co-opting Functions of Cholinesterases in Neural, Limb and Stem Cell Development

, 2012; 19(2): 155 - 164

Paul G. Layer




Enzymatic Activity and Protein Interactions in Alpha/Beta Hydrolase Fold Proteins: Moonlighting Versus Promiscuity

, 2012; 19(2): 132 - 143

Pascale Marchot and Arnaud Chatonnet




Studies on an Antifungal Protein and a Chromatographically and Structurally Related Protein Isolated from the Culture Broth of Bacillus amyloliquefaciens

, 2009; 16(11): 1399 - 1406

Jack Ho Wong and Tzi Bun Ng




Gβγ-Copurified Lipid Kinase Impurity from Sf9 Cells

, 2009; 16(9): 1053 - 1056

Aliaksei Shymanets, Mohammad Reza Ahmadian and Bernd Nurnberg




Composition and Functions of the Influenza Fusion Peptide

, 2009; 16(7): 766 - 778

Karen J. Cross, William A. Langley, Rupert J. Russell, John J. Skehel and David A. Steinhauer




Cautionary Tail: The Presence of an N-Terminal Tag on Dynein Light-Chain Roadblock/LC7 Affects Its Interaction with a Functional Partner

, 2007; 14(3): 265 - 268

Jikui Song, John L. Markley, Jikui Song and John L. Markley




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