Open Access Articles ::: Protein & Peptide Letters

ISSN: 1875-5305 (Online)
ISSN: 0929-8665 (Print)


Volume 24, 12 Issues, 2017


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Protein & Peptide Letters

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Editor-in-Chief:
Prof. Ben M. Dunn
Department of Biochemistry and Molecular Biology
University of Florida
College of Medicine
P.O. Box 100245
Gainesville, FL
USA
Email: bdunn@ufl.edu

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Open Access Articles

Glycan Phosphorylases in Multi-Enzyme Synthetic Processes

, 2017; 24(8): 696 - 709

Giulia Pergolizzi, Sakonwan Kuhaudomlarp, Eeshan Kalita and Robert A. Field*


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Therapy-Related Changes in the Serum Proteome Patterns of Early Stage Breast Cancer Patients with Different Outcomes

, 2017; 24(1): 37 - 45

Anna Walaszczyk, Monika Pietrowska, Anna Wojakowska, Agata Abramowicz, Aleksandra Chmura, Barbara Maslyk, Pawel Rodziewicz, Joanna Polanska, Katarzyna Behrendt, Elzbieta Nowicka, Rafal Tarnawski and Piotr Widlak


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Cell-Free Technologies for Proteomics and Protein Engineering

, 2016; 23(9): 819 - 827

Hiroyuki Ohashi and Etsuko Miyamoto-Sato


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The Influence of Ionizing Radiation on Exosome Composition, Secretion and Intercellular Communication

, 2016; 23(7): 656 - 663

Karol Jelonek, Piotr Widlak and Monika Pietrowska


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Kinetics for Zinc Ion Induced Sepia Pharaonis Arginine Kinase Inactivation and Aggregation

, 2016; 23(6): 508 - 517

Yue-Xiu Si, Jinhyuk Lee, Juan-Ge Cheng, Shang-Jun Yin, Yong-Doo Park, Guo-Ying Qian and Xia-Min Jiang


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Microfluidic approaches to synchrotron radiation-based Fourier transform infrared (SR-FTIR) spectral microscopy of living biosystems

, 2016; 23(3): 273 - 282

Kevin Loutherback, Giovanni Birarda, Liang Chen and Hoi-Ying N. Holman


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The Relationship between B-cell Epitope and Mimotope Sequences

, 2016; 23(2): 132 - 141

Chunhua Zhang, Yunyun Li, Weina Tang, Zhiguo Zhou, Pingping Sun and Zhiqiang Ma


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Exploring Interaction of TNF and Orthopoxviral CrmB Protein by Surface Plasmon Resonance and Free Energy Calculation

, 2014; 21(12): 1273 - 1281

Nikita V. Ivanisenko, Tatiana V. Tregubchak, Olga V. Saik, Vladimir A. Ivanisenko and Sergei N. Shchelkunov


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Bioinformatic Screening of Autoimmune Disease Genes and Protein Structure Prediction with FAMS for Drug Discovery

, 2014; 21(8): 828 - 839

Shigeharu Ishida, Hideaki Umeyama, Mitsuo Iwadate and Y-h. Taguchi


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Protein-protein Interaction Network Prediction by Using Rigid-Body Docking Tools: Application to Bacterial Chemotaxis

, 2014; 21(8): 790 - 798

Yuri Matsuzaki, Masahito Ohue, Nobuyuki Uchikoga and Yutaka Akiyama


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MEGADOCK: An All-to-All Protein-Protein Interaction Prediction System Using Tertiary Structure Data

, 2014; 21(8): 766 - 778

Masahito Ohue, Yuri Matsuzaki, Nobuyuki Uchikoga, Takashi Ishida and Yutaka Akiyama


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pH-dependent Activities and Structural Stability of Loop-2-anchoring Helix of RadA Recombinase from Methanococcus voltae

, 2014; 21(7): 679 - 687

D. E. C. S. Rao and Yu Luo


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Heat Shock Protein 40-Gok1 Isolation from Toxoplasma gondii RH Strain

, 2013; 20(12): 1294 - 1301

Kübra A. Coskun, Aykut Özgür, Begüm Otag, Mesut Mungan and Yusuf Tutar


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Prediction of Cancer Rescue p53 Mutants In Silico Using Naïve Bayes Learning Methodology

, 2013; 20(11): 1280 - 1291

R. Geetha Ramani and Shomona Gracia Jacob


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Aqueous Microwave-Assisted Solid-Phase Peptide Synthesis Using Fmoc Strategy. II. Racemization Studies and Water Based Synthesis of Cysteine- Containing Peptides

, 2013; 20(10): 1122 - 1128

Keiko Hojo, Natsuki Shinozaki, Asaki Hara, Mare Onishi, Yoshinobu Fukumori and Hideki Ichikawa


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Novel Inhibitory Activity for Serine Protease Inhibitor Kazal Type-3 (Spink3) on Human Recombinant Kallikreins

, 2013; 20(10): 1098 - 1107

Diego Magno Assis, Lucia Zalazar, Maria Aparecida Juliano, Rosana De Castro and Andreina Cesari


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The Anti-fibrotic Hormone Relaxin is not Reno-protective, Despite Being Active, in an Experimental Model of Type 1 Diabetes

, 2013; 20(9): 1029 - 1038

Su Ee Wong, Chrishan S. Samuel, Darren J. Kelly, Yuan Zhang, Gavin J. Becker and Tim D. Hewitson


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Structure-Based Prediction of Domain-Peptide Binding Affinity by Dissecting Residue Interaction Profile at Complex Interface: A Case Study on CAL PDZ Domain

, 2013; 20(9): 1018 - 1028

Rongzhong Jin, Yili Ma, Lifeng Qin and Zhong Ni


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Amyloid Fiber Formation by Synthetic Peptides Derived from the Sequence of the Protein CsgA of Escherichia coli

, 2013; 20(8): 942 - 946

Pierre Lembre, Charlotte Vendrely and Patrick Di Martino


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W-F Substitutions in Apomyoglobin Increase the Local Flexibility of the N-terminal Region Causing Amyloid Aggregation: A H/D Exchange Study

, 2013; 20(8): 898 - 904

Giuseppe Infusini, Clara Iannuzzi, Silvia Vilasi, Rosa Maritato, Leila Birolo, Daniela Pagnozzi, Piero Pucci, Gaetano Irace and Ivana Sirangelo


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Prediction of Essential Proteins in Prokaryotes by Incorporating Various Physico-chemical Features into the General form of Chou’s Pseudo Amino Acid Composition

, 2013; 20(7): 781 - 795

Aditya Narayan Sarangi, Mohtashim Lohani and Rakesh Aggarwal


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Sequence-specific 1H-NMR Assignment and Determination of the Secondary Structure of Hainantoxin-III from the Spider Ornithoctonus hainana

, 2013; 20(7): 761 - 766

Zhonghua Liu, Qi Zhu, Weijun Hu and Songping Liang


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Invertebrate FMRFamide Related Peptides

, 2013; 20(6): 647 - 670

Kevin G. Krajniak


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The Expression and Induction of Heat Shock Proteins in Molluscs

, 2013; 20(5): 602 - 606

Dongwu Liu and Zhiwei Chen


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Characterization and Decolorization Applicability of Xerogel Matrix Immobilized Manganese Peroxidase Produced from Trametes versicolor IBL-04

, 2013; 20(5): 591 - 600

Hafiz Muhammad Nasir Iqbal and Muhammad Asgher


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Type I Interferons: Ancient Peptides with Still Under-Discovered Anti-Cancer Properties

, 2013; 20(4): 412 - 423

Michele Caraglia, Alessandra Dicitore, Monica Marra, Sara Castiglioni, Luca Persani, Pasquale Sperlongano, Pierosandro Tagliaferri, Alberto Abbruzzese and Giovanni Vitale


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Red Blood Cell-Encapsulated L-Asparaginase: Potential Therapy of Patients with Asparagine Synthetase Deficient Acute Myeloid Leukemia

, 2013; 20(4): 392 - 402

Vaidehi Agrawal, Jung Hee Woo, Gautham Borthakur, Hagop Kantarjian and Arthur E. Frankel


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Virus-ECC-mPLoc: A Multi-Label Predictor for Predicting the Subcellular Localization of Virus Proteins with Both Single and Multiple Sites Based on a General Form of Chou's Pseudo Amino Acid Composition

, 2013; 20(3): 309 - 317

Xiao Wang, Guo-Zheng Li and Wen-Cong Lu


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A Sequence-based Approach for Predicting Protein Disordered Regions

, 2013; 20(3): 243 - 248

Tao Huang, Zhi-Song He, Wei-Ren Cui, Yu-Dong Cai, Xiao-He Shi, Le-Le Hu and Kuo-Chen Chou


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Predicting Antibacterial Peptides by the Concept of Chou’s Pseudo-amino Acid Composition and Machine Learning Methods

, 2013; 20(2): 180 - 186

Maede Khosravian, Fateme Kazemi Faramarzi, Majid Mohammad Beigi, Mandana Behbahani and Hassan Mohabatkar


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Identification of a Novel Antifungal Peptide with Chitin-Binding Property from Marine Metagenome

, 2012; 19(12): 1289 - 1296

Muthuirulan Pushpanathan, Jeyaprakash Rajendhran, Sathyanarayanan Jayashree, Balakrishnan Sundarakrishnan, Seetharaman Jayachandran and Paramasamy Gunasekaran


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Predicting the Metabolic Pathways of Small Molecules Based on Their Physicochemical Properties

, 2012; 19(12): 1250 - 1256

Chun-Rong Peng, Wen-Cong Lu, Bing Niu, Min-Jie Li, Xiao-YanYang and Mi-Lin Wu


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Predicting Viral Protein Subcellular Localization with Chou's Pseudo Amino Acid Composition and Imbalance-Weighted Multi-Label K-Nearest Neighbor Algorithm

, 2012; 19(11): 1163 - 1169

Jun-Zhe Cao, Wen-Qi Liu and Hong Gu


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Incorporating Secondary Features into the General form of Chou's PseAAC for Predicting Protein Structural Class

, 2012; 19(11): 1133 - 1138

Bo Liao, Qilin Xiang and Dachao Li


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Hydropathic Self-Organized Criticality: A Magic Wand for Protein Physics

, 2012; 19(10): 1089 - 1093

J.C. Phillips


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pH-sensitive Self-associations of the N-terminal Domain of NBCe1-A Suggest a Compact Conformation under Acidic Intracellular Conditions

, 2012; 19(10): 1054 - 1063

Harindarpal S. Gill


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Resuscitation-promoting Factors (Rpf): In Search of Inhibitors

, 2012; 19(10): 1026 - 1034

Arseny S. Kaprelyants, Galina V. Mukamolova, Alessia Ruggiero, Vadim A. Makarov, Galina R. Demina, Margarita O. Shleeva, Vasilii D. Potapov and Pavel A. Shramko


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Secreted Nucleobindin-2 Inhibits 3T3-L1 Adipocyte Differentiation

, 2012; 19(9): 997 - 1004

Yuko Tagaya, Aya Osaki, Atsuko Miura, Shuichi Okada, Kihachi Ohshima, Koshi Hashimoto, Masanobu Yamada, Tetsurou Satoh, Hiroyuki Shimizu and Masatomo Mori


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Predicting Protein Solubility by the General Form of Chou’s Pseudo Amino Acid Composition: Approached from Chaos Game Representation and Fractal Dimension

, 2012; 19(9): 940 - 948

Xiao-Hui Niu, Xue-Hai Hu, Feng Shi and Jing-Bo Xia


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Prediction of Human Genes’ Regulatory Functions Based on Proteinprotein Interaction Network

, 2012; 19(9): 910 - 916

Peng Gao, Qing-Ping Wang, Lei Chen and Tao Huang


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Identifying GPCRs and their Types with Chou’s Pseudo Amino Acid Composition: An Approach from Multi-scale Energy Representation and Position Specific Scoring Matrix

, 2012; 19(8): 890 - 903

Zia-ur-Rehman and Asifullah Khan


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Effect of the Compatible Solute Ectoine on the Stability of the Membrane Proteins

, 2012; 19(8): 791 - 794

Arpita Roychoudhury, Dieter Haussinger and Filipp Oesterhelt


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Enhanced Crystallizability by Protein Engineering Approaches: A General Overview

, 2012; 19(7): 732 - 742

Alessia Ruggiero, Giovanni Smaldone, Flavia Squeglia and Rita Berisio


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Bioactive Peptides from Marine Organisms: A Short Overview

, 2012; 19(7): 700 - 707

Fernando Lazcano-Perez, Sergio A. Roman-Gonzalez, Nuria Sanchez-Puig and Roberto Arreguin- Espinosa


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Comparison of the Neutrophil Proteome in Trauma Patients and Normal Controls

, 2012; 19(6): 663 - 672

Liz M.B. Teles, Elaine N. Aquino, Anne C.D. Neves, Carlos H.S. Garcia, Peter Roepstorff, Belchor Fontes, Mariana S. Castro and Wagner Fontes


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Using Protein-protein Interaction Network Information to Predict the Subcellular Locations of Proteins in Budding Yeast

, 2012; 19(6): 644 - 651

Le-Le Hu, Kai-Yan Feng, Yu-Dong Cai and Kuo-Chen Chou


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Mechanism of Action and Relationship Between Structure and Biological Activity of Ctx-Ha: A New Ceratotoxin-like Peptide from Hypsiboas albopunctatus

, 2012; 19(6): 596 - 603

Graziely Ferreira Cespedes, Esteban Nicolas Lorenzon, Eduardo Festozo Vicente, Maria Jose Soares Mendes-Giannini, Wagner Fontes, Mariana de Souza Castro and Eduardo Maffud Cilli


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Predicting Protein-Protein Interactions by Combing Various Sequence- Derived Features into the General Form of Chou’s Pseudo Amino Acid Composition

, 2012; 19(5): 492 - 500

Xiao-Wei Zhao, Zhi-Qiang Ma and Ming-Hao Yin


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Dual-Layer Wavelet SVM for Predicting Protein Structural Class Via the General Form of Chou’s Pseudo Amino Acid Composition

, 2012; 19(4): 422 - 429

Chao Chen, Zhi-Bin Shen and Xiao-Yong Zou


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Discriminating Outer Membrane Proteins with Fuzzy K-Nearest Neighbor Algorithms Based on the General Form of Chou’s PseAAC

, 2012; 19(4): 411 - 421

Maqsood Hayat and Asifullah Khan


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Functional Investigation of Conserved Membrane-Embedded Glutamate Residues in the Proton-Coupled Peptide Transporter YjdL

, 2012; 19(3): 282 - 287

Johanne M. Jensen, Heidi A. Ernst, Xiaole Wang, Helle Hald, Amarah C. Ditta, Fouzia Ismat, Moazur Rahman and Osman Mirza


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Extracellular Sunflower Proteins: Evidence on Non-classical Secretion of a Jacalin-Related Lectin

, 2012; 19(3): 270 - 276

Marcela Pinedo, Mariana Regente, Mercedes Elizalde, Ivana Y. Quiroga, Luciana A. Pagnussat, Jesus Jorrin-Novo, Ana Maldonado and Laura de la Canal


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Co-opting Functions of Cholinesterases in Neural, Limb and Stem Cell Development

, 2012; 19(2): 155 - 164

Paul G. Layer


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Enzymatic Activity and Protein Interactions in Alpha/Beta Hydrolase Fold Proteins: Moonlighting Versus Promiscuity

, 2012; 19(2): 132 - 143

Pascale Marchot and Arnaud Chatonnet


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Studies on an Antifungal Protein and a Chromatographically and Structurally Related Protein Isolated from the Culture Broth of Bacillus amyloliquefaciens

, 2009; 16(11): 1399 - 1406

Jack Ho Wong and Tzi Bun Ng


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Gβγ-Copurified Lipid Kinase Impurity from Sf9 Cells

, 2009; 16(9): 1053 - 1056

Aliaksei Shymanets, Mohammad Reza Ahmadian and Bernd Nurnberg


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Composition and Functions of the Influenza Fusion Peptide

, 2009; 16(7): 766 - 778

Karen J. Cross, William A. Langley, Rupert J. Russell, John J. Skehel and David A. Steinhauer


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Cautionary Tail: The Presence of an N-Terminal Tag on Dynein Light-Chain Roadblock/LC7 Affects Its Interaction with a Functional Partner

, 2007; 14(3): 265 - 268

Jikui Song, John L. Markley, Jikui Song and John L. Markley


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