Contents

Current Protein & Peptide Science, Volume 12 - Number 6

Editorial [Hot Topic: Machine Learning Models in Protein Bioinformatics (Guest Editors: Lukasz Kurgan & Yaoqi Zhou)]

, 12(6): 455

Lukasz Kurgan and Yaoqi Zhou


DOI: 10.2174/138920311796957621




Computational Methods for Identification of Functional Residues in Protein Structures

, 12(6): 456 - 469

Fuxiao Xin and Predrag Radivojac


DOI: 10.2174/138920311796957685




Structural Protein Descriptors in 1-Dimension and their Sequence-Based Predictions

, 12(6): 470 - 489

Lukasz Kurgan and Fatemeh Miri Disfani


DOI: 10.2174/138920311796957711




Machine Learning Algorithms for Predicting Protein Folding Rates and Stability of Mutant Proteins: Comparison with Statistical Methods

, 12(6): 490 - 502

M. Michael Gromiha and Liang-Tsung Huang


DOI: 10.2174/138920311796957630




Small Open Reading Frames: Current Prediction Techniques and Future Prospect

, 12(6): 503 - 507

Haoyu Cheng, Wai Soon Chan, Zhixiu Li, Dan Wang, Song Liu and Yaoqi Zhou


DOI: 10.2174/138920311796957667




Cellular Automata and Its Applications in Protein Bioinformatics

, 12(6): 508 - 519

Xuan Xiao, Pu Wang and Kuo-Chen Chou


DOI: 10.2174/138920311796957720




Molecular Surface Representation Using 3D Zernike Descriptors for Protein Shape Comparison and Docking

, 12(6): 520 - 530

Daisuke Kihara, Lee Sael, Rayan Chikhi and Juan Esquivel-Rodriguez


DOI: 10.2174/138920311796957612




Structural Models of Protein-DNA Complexes Based on Interface Prediction and Docking

, 12(6): 531 - 539

Sanbo Qin and Huan-Xiang Zhou


DOI: 10.2174/138920311796957694




A Sampling-Based Method for Ranking Protein Structural Models by Integrating Multiple Scores and Features

, 12(6): 540 - 548

Xiaohu Shi, Jingfen Zhang, Zhiquan He, Yi Shang and Dong Xu


DOI: 10.2174/138920311796957658




Neural Network Pairwise Interaction Fields for Protein Model Quality Assessment and Ab Initio Protein Folding

, 12(6): 549 - 562

Alberto J.M. Martin, Claudio Mirabello and Gianluca Pollastri


DOI: 10.2174/138920311796957649




Solvent and Lipid Accessibility Prediction as a Basis for Model Quality Assessment in Soluble and Membrane Proteins

, 12(6): 563 - 573

Mukta Phatak, Rafal Adamczak, Baoqiang Cao, Michael Wagner and Jaroslaw Meller


DOI: 10.2174/138920311796957603




On the Relationship Between Catalytic Residues and their Protein Contact Number

, 12(6): 574 - 579

Shao-Wei Huang, Sung-Huan Yu, Chien-Hua Shih, Huei-Wen Guan, Tsun-Tsao Huang and Jenn-Kang Hwang


DOI: 10.2174/138920311796957676




Conotoxin Superfamily Prediction Using Diffusion Maps Dimensionality Reduction and Subspace Classifier

, 12(6): 580 - 588

Jiang-Bo Yin, Yong-Xian Fan and Hong-Bin Shen


DOI: 10.2174/138920311796957702




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