Contents

Current Bioinformatics, Volume 9 - Number 3

Editorial

Editorial (Thematic Issue: Nonlinear Science Methods in Bioinformatics and Systems Biology)

, 9(3): 209

Zu-Guo Yu


DOI: 10.2174/157489360903140619113217




A 2D Pattern Matching Algorithm for Comparing Primary Protein Sequences

, 9(3): 210 - 217

Guohua Huang, Weiping Huang, Wenping Xie, Yongfan Li, Lixin Xu and Houqing Zhou


DOI: 10.2174/1574893609666140516005556




Dissimilarities in Alignment-Free Methods for Phylogenetic Analysis Based on Genomes

, 9(3): 218 - 227

Xiao-Su Chen, Zu-Guo Yu and Juan Zheng


DOI: 10.2174/1574893609999140523124702




Influenza Pandemic Early Warning Research on HA/NA Protein Sequences

, 9(3): 228 - 233

Jie Gao, Ling Zhang and Peixuan Jin


DOI: 10.2174/1574893609999140523124205




Optimizing I/O Cost and Managing Memory for Composition Vector Method Based on Correlation Matrix Calculation in Bioinformatics

, 9(3): 234 - 245

Anaththa P.D. Krishnajith, Wayne Kelly and Yu-Chu Tian


DOI: 10.2174/1574893609666140516005327




Robustness of Link-Prediction Algorithm Based on Similarity and Application to Biological Networks

, 9(3): 246 - 252

Liang Wang, Ke Hu and Yi Tang


DOI: 10.2174/1574893609666140516005740




Secondary Structure Element Alignment Kernel Method for Prediction of Protein Structural Classes

, 9(3): 253 - 257

Guo-Sheng Han, Zu-Guo Yu and Vo Anh


DOI: 10.2174/1574893609999140523124847




Semi-Supervised Transductive Hot Spot Predictor Working on Multiple Assumptions

, 9(3): 258 - 267

Jim Jing-Yan Wang, Islam Khaleel Almasri, Yuexiang Shi and Xin Gao


DOI: 10.2174/1574893609999140523124421




RNA Secondary Structure Prediction Algorithms Including Pseudoknots

, 9(3): 268 - 283

Dolly Sharma, Shailendra Singh and Trilok Chand


DOI: 10.2174/15748936113086660010




Prediction of Vanillin and Glutamate Productions in Yeast Using a Hybrid of Continuous Bees Algorithm and Flux Balance Analysis (CBAFBA)

, 9(3): 284 - 294

Leang Huat Yin, Yee Wen Choon, Mohd Saberi Mohamad, Lian En Chai, Chuii Khim Chong, Afnizanfaizal Abdullah, Safaai Deris and Rosli M Illias


DOI: 10.2174/1574893608666131120233937




A Comprehensive View on Metabolic Pathway Analysis Methodologies

, 9(3): 295 - 305

Namrata Tomar and Rajat K. De


DOI: 10.2174/1574893609666140516005147




Select Cluster Features for Better Layered Protein Function Prediction

, 9(3): 306 - 314

Wei Zhu, Jingyu Hou and Yi-Ping Phoebe Chen


DOI: 10.2174/1574893608666131121224631




Trends in Genome Compression

, 9(3): 315 - 326

Sebastian Wandelt, Marc Bux and Ulf Leser


DOI: 10.2174/1574893609666140516010143




Molecular Modeling and Assessing the Catalytic Activity of Glucose Dehydrogenase of Gluconobacter suboxydans with a New Approach for Power Generation in a Microbial Fuel Cell

, 9(3): 327 - 330

R. Navanietha Krishnaraj, Saravanan Chandran, Parimal Pal and Sheela Berchmans


DOI: 10.2174/1574893608666131217234633




Review of Protein Subcellular Localization Prediction

, 9(3): 331 - 342

Zhen Wang, Quan Zou, Yi Jiang, Ying Ju and Xiangxiang Zeng


DOI: 10.2174/1574893609666140212000304




Prediction of miRNA in Human MHC that Encodes Different Immunological Functions Using Support Vector Machines

, 9(3): 343 - 347

Archana Prabahar and Jeyakumar Natarajan


DOI: 10.2174/1574893608666131120002036




A Partial Least Squares Algorithm for Microarray Data Analysis Using the VIP Statistic for Gene Selection and Binary Classification

, 9(3): 348 - 359

Francisco J. Burguillo, Luis A. Corchete, Javier Martin, Inmaculada Barrera and William G. Bardsley


DOI: 10.2174/15748936113086660011




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