Contents

Current Bioinformatics, Volume 7 - Number 2

Editorial [Hot Topic: Bioinformatics on Proteins and Complexes (Guest Editor: M. Michael Gromiha)]

, 7(2): 109 - 110

M. Michael Gromiha


DOI: 10.2174/157489312800604453




Sequence-Structure Similarity: Do Sequentially Identical Peptide Fragments have Similar Three-Dimensional Structures?

, 7(2): 111 - 115

Muthukumarasamy Uthayakumar, Sanjeev Patra, Raju Nagarajan and Kanagaraj Sekar


DOI: 10.2174/157489312800604345




Glocal: Reconstructing Protein 3D Structure from 2D Contact Map by Combining Global and Local Optimization Schemes

, 7(2): 116 - 124

Jun Chen and Hong-Bin Shen


DOI: 10.2174/157489312800604381




A Computational Identification Method for GPI-Anchored Proteins by Artificial Neural Network

, 7(2): 125 - 131

Yuri Mukai, Hirotaka Tanaka, Masao Yoshizawa, Osamu Oura, Takanori Sasaki and Masami Ikeda


DOI: 10.2174/157489312800604390




Recent Advances in Predicting G-Protein Coupled Receptor Classification

, 7(2): 132 - 142

Xuan Xiao, Wei-Zhong Lin and Kuo-Chen Chou


DOI: 10.2174/157489312800604426




Role of Long-Range Contacts and Structural Classification in Understanding the Free Energy of Unfolding of Two-State Proteins

, 7(2): 143 - 151

Balasubramanian Hariha and Samuel Selvaraj


DOI: 10.2174/157489312800604372




Discrimination of Thermophilic and Mesophilic Proteins Using Reduced Amino Acid Alphabets with n-Grams

, 7(2): 152 - 158

Aydin Albayrak and Ugur O. Sezerman


DOI: 10.2174/157489312800604435




Bioinformatics of Protein-Protein Interfaces and Small Molecule Effectors

, 7(2): 159 - 172

Peter Walter, Ozlem Ulucan, Jennifer Metzger and Volkhard Helms


DOI: 10.2174/157489312800604444




Development of RNA Stiffness Parameters and Analysis on Protein-RNA Binding Specificity: Comparison with DNA

, 7(2): 173 - 179

M. Michael Gromiha


DOI: 10.2174/157489312800604408




Predicting Protein Metal Binding Sites with RBF Networks based on PSSM Profiles and Additional Properties

, 7(2): 180 - 186

Yu-Yen Ou


DOI: 10.2174/157489312800604417




Structure-Based Discovery of Anti-Viral Compounds for Hepatitis B & C, Human Immunodeficiency, and Dengue Viruses

, 7(2): 187 - 211

Devadasan Velmurugan, Udhayasuriyan Malar Selvi, Udhayakumar Mythily, Kutumba Rao, Ramaiah Rajarajeshwari and Sangeetha


DOI: 10.2174/157489312800604462




Data Preprocessing and Filtering in Mass Spectrometry Based Proteomics

, 7(2): 212 - 220

Beata Reiz, Attila Kertesz-Farkas, Sandor Pongor and Michael P. Myers


DOI: 10.2174/157489312800604363




Database Searching in Mass Spectrometry Based Proteomics

, 7(2): 221 - 230

Attila Kertesz-Farkas, Beata Reiz, Michael P. Myers and Sandor Pongor


DOI: 10.2174/157489312800604354




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