Open Access Articles

Inter-Species/Host-Parasite Protein Interaction Predictions Reviewed

, 2018; 13(4): 396 - 406

Jumoke Soyemi, Itunnuoluwa Isewon, Jelili Oyelade* and Ezekiel Adebiyi




SARELI: Sequence Alignment by Radial Evaluation of Local Interactions

, 2018; 13(3): 290 - 298

Ricardo Ortega, Arturo Chavoya*, Cuauhtemoc Lopez-Martin and Luis Delaye




A Novel Approach based on Bipartite Network to Predict Human Microbe-Disease Associations

, 2018; 13(2): 141 - 148

Lei Wang*, Pengyao Ping, Linai Kuang, Songtao Ye, Faisal Muhammad Buland lqbal and Tingrui Pei




Large-scale Investigation of Long Noncoding RNA Secondary Structures in Human and Mouse

, 2018; 13: 1 - 11 (E-Pub Ahead of Print)

Xingli Guo, Lin Gao*, Yu Wang, David K.Y. Chiu, Bingbo Wang, Yue Deng and Xiao Wen




Improving Self-interacting Proteins Prediction Accuracy Using Protein Evolutionary Information and Weighed-Extreme Learning Machine

, 2018; 13: 1 - 8 (E-Pub Ahead of Print)

Ji-Yong An*, Yong Zhou, Lei Zhang, Qiang Niu and Da-Fu Wang




An Efficient Prediction of HPV Genotypes from Partial Coding Sequences by Chaos Game Representation and Fuzzy k-Nearest Neighbor Technique

, 2017; 12(5): 431 - 440

Watcharaporn Tanchotsrinon*, Chidchanok Lursinsap and Yong Poovorawan




A Fast Algorithm for Reconstructing Multiple Sequence Alignment and Phylogeny Simultaneously

, 2017; 12(4): 329 - 348

Chi-Tim Ng, Chun Li and Xiaodan Fan*




Novel Elements of Bacterial Genomes – Promoter Islands: Intraspecies Polymorphism and Sequence Stability

, 2017; 12(3): 194 - 201

Sergey S. Kiselev, Olga N. Ozoline*, Olga A. Glazunova, Valeriy V. Panyukov and Konstantin S. Shavkunov




Computer Representations of Bioinformatics Models

, 2016; 11(5): 551 - 560

Tomasz Prejzendanc, Szymon Wasik* and Jacek Blazewicz




Recent Advances in Mathematical Modeling and Simulation of DNA Replication Process.

, 2013; 8(5): 591 - 602

Guoli Ji, Yong Zeng, Jinting Guan, Qingshun Q. Li, Congting Ye and Yunlong Liu




Similarity/Dissimilarity Analysis of Protein Sequences by a New Graphical Representation.

, 2013; 8(5): 539 - 544

Guohua Huang and Jerry Hu




S2SNet: A Tool for Transforming Characters and Numeric Sequences into Star Network Topological Indices in Chemoinformatics, Bioinformatics, Biomedical, and Social-Legal Sciences

, 2013; 8(4): 429 - 437

Cristian R. Munteanu, Alexandre L. Magalhaes, Aliuska Duardo-Sanchez, Alejandro Pazos and Humberto Gonzalez-Diaz




Review of Stochastic Stability and Analysis Tumor-Immune Systems

, 2013; 8(4): 390 - 400

Chi s Oana, Opri s Dumitru and Concu Riccardo




On the Discovery of Cellular Subsystems in Gene Correlation Networks Using Measures of Centrality

, 2013; 8(3): 305 - 314

Kathryn M. Dempsey and Hesham H. Ali




Metabolic Network Analysis: Current Status and Way Forward

, 2013; 8(3): 285 - 292

Shweta Kolhi and Ashok S. Kolaskar




Cellular Relationships of Testicular Germ Cell Tumors Determined by Partial Canonical Correlation Analysis of Gene Expression Signatures

, 2013; 8(1): 72 - 79

Tingting Yu, Akiko Toshimori, Xia Jinrong, Shigeru Saito, Xingrong Zhou, Katsuhisa Horimoto, Zhining Fan, Kunio Shimizu and Huarong Zhou




Significant Substructure Discovery in Dynamic Networks

, 2013; 8(1): 46 - 55

Guimin Qin, Lin Gao and Jianye Yang




Integrative Approaches for microRNA Target Prediction: Combining Sequence Information and the Paired mRNA and miRNA Expression Profiles

, 2013; 8(1): 37 - 45

Naifang Su, Minping Qian and Minghua Deng




Assessing the Statistical Significance of Local Sequence Alignment Based on Transformation Score Matrix

, 2012; 7(4): 505 - 511

Juan Li and Huisheng Fang




From Ontology-Based Gene Function to Physiological Model

, 2012; 7(4): 436 - 446

Ajay Shiv Sharma, Hari Om Gupta and Petar M. Mitrasinovic




A Novel Method of Sequence Similarity Evaluation in N-dimensional Sequence Space

, 2012; 7(3): 295 - 303

Andrzej Kasperski and Renata Kasperska




A Filter Based Feature Selection Algorithm Using Null Space of Covariance Matrix for DNA Microarray Gene Expression Data

, 2012; 7(3): 289 - 294

Alok Sharma, Seiya Imoto and Satoru Miyano




Role of Long-Range Contacts and Structural Classification in Understanding the Free Energy of Unfolding of Two-State Proteins

, 2012; 7(2): 143 - 151

Balasubramanian Hariha and Samuel Selvaraj




Glocal: Reconstructing Protein 3D Structure from 2D Contact Map by Combining Global and Local Optimization Schemes

, 2012; 7(2): 116 - 124

Jun Chen and Hong-Bin Shen




Genome Annotation in Plants and Fungi: EuGene as a Model Platform

, 2008; 3(2): 87 - 97

Sylvain Foissac, Jerome Gouzy, Stephane Rombauts, Catherine Mathe, Joelle Amselem, Lieven Sterck, Yves Van de Peer, Pierre Rouze and Thomas Schiex




Phenotype Data: A Neglected Resource in Biomedical Research?

, 2006; 1(3): 347 - 358

Philip Groth and Bertram Weiss




The Role of the COG Database in Comparative and Functional Genomics

, 2006; 1(3): 291 - 300

Michael Kaufmann




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