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Plant Bioinformatics: from genome to phenome


Guest Editor(s): Ming Chen, Ziding Zhang, Youhuang Bai
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Application of Novel Computational Methods in Molecular Biology, Biomedicine and Biopharmacy


Current Bioinformatics, Volume 11, Number 1
Guest Editor(s): Yudong Cai Cai

Authors' Comments
I am very much satisfied with the review process and the communication made by the team for my manuscript. I have struggled a lot to prepare the pictures as per the requirements. But your team has patiently given feedback about the corrections and finally agreed to approve. Really, i am very much thankful to that.

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(Department of CSE, Kongu Engineering College, Perundurai, Erode, TamilNadu, India)


Current Bioinformatics

,

Volume 14

-

Number 2



Review Article



Research Article   Open Access



Research Article

Benchmarking Classification Models for Cell Viability on Novel Cancer Image Datasets

, 14(2): 108 - 114

Akın Özkan*, Sultan Belgin İşgör, Gökhan Şengül and Yasemin Gülgün İşgör


DOI: 10.2174/1574893614666181120093740




Research Article   Open Access



Research Article



Research Article



Research Article

Robust Pulmonary Nodule Segmentation in CT Image for Juxta-pleural and Juxta-vascular Case

, 14(2): 139 - 147

Zhang Yang*, Xie Yingying, Guo Li, Zhang Zewei, Ding Weifeng, Pan Zhifang and Qin Jing


DOI: 10.2174/1574893613666181029100249




Research Article



Articles Ahead of Print

MGB Block ARMS Real-Time PCR for Diagnosis of CYP2C19 Mutation in a Chinese Population


Xiwen Jiang*, Yue Liu, Taosheng Huang, Xiaoya Zhu and Xiaoxie Xu


View Abstract



A Novel Approach Based on Point Cut Set to Predict Associations of Diseases and LncRNAs


Linai Kuang, Haochen Zhao, Lei Wang*, Zhanwei Xuan and Tingrui Pei


View Abstract


Sequence-Based Structural B-cell Epitope Prediction by Using Two Layer SVM Model and Association Rule Features


Jehn-Hwa Kuo, Chi-Chang Chang*, Chi-Wei Chen, Heng-Hao Liang, Chih-Yen Chang and Yen-Wei Chu*


View Abstract


Analysis of Single-Cell RNA-seq Data by Clustering Approaches


Xiaoshu Zhu, Hong-Dong Li, Lilu Guo, Fang-Xiang Wu and Jianxin Wang*


View Abstract


An Integrated Chikungunya Virus Database to Facilitate Therapeutic Analysis: ChkVDb


Priya Narang, Mehak Dangi, Deepak Sharma, Alka Khichi and Anil Kumar Chhillar*


View Abstract






Abstracts Ahead of Print


GMSA: A Data Sharing System for Multiple Sequence Alignment across Multiple Users


Na Bai, Shanjiang Tang*, Ce Yu*, Hao Fu , Chen Wang and Xi Chen


View Abstract



Bioinformatics study on serum triglyceride levels for analysis of a potential risk factor affecting blood pressure variability


Lin Xu, Jiangming  Huang, Zhe  Zhang, Jian  Qiu, Yan  Guo, Huijuan Zhao, Zekun  Cai, Xiaomin  Huang, Yongwang  Fan, Yehao  Xu, Jun  Ma and Wanqing  Wu*


View Abstract




HSEAT: A Tool for Plant Heat Shock Element Analysis, Motif Identification and Analysis


Sarah Rizwan Qazi, Noor ul Haq, Shakeel Ahmad and Samina N Shakeel*


View Abstract





Editor's Choice





Recent Progress in Long Noncoding RNAs Prediction

, 2018; 13(4): 344 - 351

Yuhua Yao*, Xianhong Li, Lili Geng, Xuying Nan, Zhaohui Qi and Bo Liao*


DOI: 10.2174/1574893612666170905153933





Prediction of Protein-Peptide Interactions with a Nearest Neighbor Algorithm

, 2018; 13(1): 14 - 24

Bi-Qing Li, Yu-Hang Zhang, Mei-Ling Jin, Tao Huang and Yu-Dong Cai*


DOI: 10.2174/1574893611666160711162006





Open Access Articles


Dysfunctional Mechanism of Liver Cancer Mediated by Transcription Factor and Non-coding RNA

, 2019; 14(2): 100 - 107

Wei Zeng, Fang Wang, Yu Ma, Xianchun Liang and Ping Chen*





Low Rank Representation and Its Application in Bioinformatics

, 2018; 13(5): 508 - 517

Yuan You, Hongmin Cai* and Jiazhou Chen




Large-scale Investigation of Long Noncoding RNA Secondary Structures in Human and Mouse

, 2018; 13(5): 450 - 460

Xingli Guo, Lin Gao*, Yu Wang, David K.Y. Chiu, Bingbo Wang, Yue Deng and Xiao Wen




Inter-Species/Host-Parasite Protein Interaction Predictions Reviewed

, 2018; 13(4): 396 - 406

Jumoke Soyemi, Itunnuoluwa Isewon, Jelili Oyelade* and Ezekiel Adebiyi




SARELI: Sequence Alignment by Radial Evaluation of Local Interactions

, 2018; 13(3): 290 - 298

Ricardo Ortega, Arturo Chavoya*, Cuauhtemoc Lopez-Martin and Luis Delaye




A Novel Approach based on Bipartite Network to Predict Human Microbe-Disease Associations

, 2018; 13(2): 141 - 148

Lei Wang*, Pengyao Ping, Linai Kuang, Songtao Ye, Faisal Muhammad Buland lqbal and Tingrui Pei








Novel Elements of Bacterial Genomes – Promoter Islands: Intraspecies Polymorphism and Sequence Stability

, 2017; 12(3): 194 - 201

Sergey S. Kiselev, Olga N. Ozoline*, Olga A. Glazunova, Valeriy V. Panyukov and Konstantin S. Shavkunov




Computer Representations of Bioinformatics Models

, 2016; 11(5): 551 - 560

Tomasz Prejzendanc, Szymon Wasik* and Jacek Blazewicz




An Agent-Based Model to Associate Genomic and Environmental Data for Phenotypic Prediction in Plants

, 2016; 11(5): 515 - 522

Sebastien Alameda, Jean-Pierre Mano, Carole Bernon and Sebastien Mella





Most Cited Articles

Application of the Shortest Path Algorithm for the Discovery of Breast Cancer-Related Genes

, 2016; 11(1): 51-58.

Lei Chen, Zhi Hao Xing, Tao Huang, Yang Shu, GuoHua Huang and Hai-Peng Li*


DOI: 10.2174/1574893611666151119220024



Prioritizing Disease Genes by Using Search Engine Algorithm

, 2016; 11(2): 195-202.

Min Li, Ruiqing Zheng, Qi Li, Jianxin Wang*, Fang-Xiang Wu and Zhuohua Zhang


DOI: 10.2174/1574893611666160125220905


Prediction of Linear B-Cell Epitopes with mRMR Feature Selection and Analysis

, 2016; 11(1): 22-31.

Bi-Qing Li, Lu-Lu Zheng, Kai-Yan Feng, Le-Le Hu, Guo-Hua Huang* and Lei Chen*


DOI: 10.2174/1574893611666151119215131



Computer Representations of Bioinformatics Models

, 2016; 11(5): 551-560.

Tomasz Prejzendanc, Szymon Wasik* and Jacek Blazewicz


DOI: 10.2174/1574893610666150928193510


Reconstruction of the Network of Experimentally Validated AMP-Drug Combinations Against Pseudomonas aeruginosa Infections

, 2016; 11(5): 523-530.

Paula Jorge, Martín Pérez-Pérez, Gael Pérez Rodríguez, Florentino Fdez-Riverola, Maria Olivia Pereira and Anália Lourenço*


DOI: 10.2174/1574893611666160617093955





Most Accessed Articles

Large-scale Investigation of Long Noncoding RNA Secondary Structures in Human and Mouse

, 2018; 13(5): 450-460.

Xingli Guo, Lin Gao*, Yu Wang, David K.Y. Chiu, Bingbo Wang, Yue Deng and Xiao Wen


DOI: 10.2174/1574893613666180118111019



Group-sparse Modeling Drug-kinase Networks for Predicting Combinatorial Drug Sensitivity in Cancer Cells

, 2018; 13(5): 437-443.

Hui Liu, Libo Luo, Zhanzhan Cheng, Jianjiang Sun, Jihong Guan, Jie Zheng* and Shuigeng Zhou*


DOI: 10.2174/1574893613666180118104250


Inter-Species/Host-Parasite Protein Interaction Predictions Reviewed

, 2018; 13(4): 396-406.

Jumoke Soyemi, Itunnuoluwa Isewon, Jelili Oyelade* and Ezekiel Adebiyi


DOI: 10.2174/1574893613666180108155851


Application of the Shortest Path Algorithm for the Discovery of Breast Cancer-Related Genes

, 2016; 11(1): 51-58.

Lei Chen, Zhi Hao Xing, Tao Huang, Yang Shu, GuoHua Huang and Hai-Peng Li*


DOI: 10.2174/1574893611666151119220024


Nextpresso: Next Generation Sequencing Expression Analysis Pipeline

, 2018; 13(6): 583-591.

O. Graña*, M. Rubio-Camarillo, F. Fdez-Riverola, D.G. Pisano and D. Glez-Peña


DOI: 10.2174/1574893612666170810153850





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