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Primary MATLAB® for Life Sciences: Guide for Beginners



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Special Issues - In-Press

Plant Bioinformatics: from genome to phenome


Guest Editor(s): Ming Chen, Ziding Zhang, Youhuang Bai
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Application of Novel Computational Methods in Molecular Biology, Biomedicine and Biopharmacy


Current Bioinformatics, Volume 11, Number 1
Guest Editor(s): Yudong Cai Cai

Authors' Comments
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Current Bioinformatics

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Volume 13

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Number 6



Editorial   Open Access



Research Article



Research Article

Extracting Diagnostic Knowledge from MedLine Plus: A Comparison between MetaMap and cTAKES Approaches

, 13(6): 573 - 582

Alejandro Rodríguez-González*, Roberto Costumero, Marcos Martinez-Romero, Mark D. Wilkinson and Ernestina Menasalvas-Ruiz


DOI: 10.2174/1574893612666170727094502




Research Article

Nextpresso: Next Generation Sequencing Expression Analysis Pipeline

, 13(6): 583 - 591

O. Graña*, M. Rubio-Camarillo, F. Fdez-Riverola, D.G. Pisano and D. Glez-Peña


DOI: 10.2174/1574893612666170810153850




Research Article

Determining the Influence of Class Imbalance for the Triage of Biomedical Documents

, 13(6): 592 - 605

Jorge Fdez-Glez, David Ruano-Ordás, José R. Méndez , Florentino Fdez-Riverola*, Rosalía Laza and Reyes Pavón


DOI: 10.2174/1574893612666170718151238




General Research Article



General Research Article



General Research Article



Current Bioinformatics, Volume 14 (2019) - Number 1


This issue is in progress but contains articles that are final and fully citable.

Abstracts Ahead of Print

Clustering of Single-cell RNA-seq Data by Unsupervised Learning Methods


Xiaoshu Zhu, Hong-Dong Li, Lilu Guo, Fang-Xiang Wu and Jianxin Wang*


View Abstract


Benchmarking Classification Models for Cell Viability on Novel Cancer Image Datasets


Akın Özkan*, Sultan Belgin İşgör, Gökhan Şengül and Yasemin Gülgün İşgör


View Abstract




Research Progress of Exogenous Plant MiRNAs in Cross-kingdom Regulation


Hao Zhang*, Mengping Zhan, Haowu Chang, Shizeng Song, Chunhe Zhang and Yuanning Liu


View Abstract


A brief survey of machine learning methods in protein sub-Golgi localization


Wuritu Yang, Xiao-Juan Zhu, Jian Huang, Hui Ding and Hao Lin*


View Abstract




Elastic Net Regularized Softmax Regression Methods for Multi-subtype Classification in Cancer


Lin Zhang*, Yanling He, Haiting Song, Xuesong Wang, Nannan Lu, Lei Sun and Hui Liu


View Abstract



Editor's Choice



Recent Progress in Long Noncoding RNAs Prediction

, 2018; 13(4): 344 - 351

Yuhua Yao*, Xianhong Li, Lili Geng, Xuying Nan, Zhaohui Qi and Bo Liao*


DOI: 10.2174/1574893612666170905153933





Prediction of Protein-Peptide Interactions with a Nearest Neighbor Algorithm

, 2018; 13(1): 14 - 24

Bi-Qing Li, Yu-Hang Zhang, Mei-Ling Jin, Tao Huang and Yu-Dong Cai*


DOI: 10.2174/1574893611666160711162006







Open Access Articles

Large-scale Investigation of Long Noncoding RNA Secondary Structures in Human and Mouse

, 2018; 13(5): 450 - 460

Xingli Guo, Lin Gao*, Yu Wang, David K.Y. Chiu, Bingbo Wang, Yue Deng and Xiao Wen




Inter-Species/Host-Parasite Protein Interaction Predictions Reviewed

, 2018; 13(4): 396 - 406

Jumoke Soyemi, Itunnuoluwa Isewon, Jelili Oyelade* and Ezekiel Adebiyi




SARELI: Sequence Alignment by Radial Evaluation of Local Interactions

, 2018; 13(3): 290 - 298

Ricardo Ortega, Arturo Chavoya*, Cuauhtemoc Lopez-Martin and Luis Delaye




A Novel Approach based on Bipartite Network to Predict Human Microbe-Disease Associations

, 2018; 13(2): 141 - 148

Lei Wang*, Pengyao Ping, Linai Kuang, Songtao Ye, Faisal Muhammad Buland lqbal and Tingrui Pei







Circadian Clock Gene of Grass Carp (Ctenopharyngodon idellus): Genomic Structure and Tissue Expression Pattern of Period1 Gene

, 2017; 12(4): 312 - 319

Yuhui He, Xu-fang Liang, Shan He*, Xiaochen Yuan, Qingchao Wang, Wenjing Cai and Longfang Sun




Novel Elements of Bacterial Genomes – Promoter Islands: Intraspecies Polymorphism and Sequence Stability

, 2017; 12(3): 194 - 201

Sergey S. Kiselev, Olga N. Ozoline*, Olga A. Glazunova, Valeriy V. Panyukov and Konstantin S. Shavkunov




Computer Representations of Bioinformatics Models

, 2016; 11(5): 551 - 560

Tomasz Prejzendanc, Szymon Wasik* and Jacek Blazewicz





Recent Advances in Mathematical Modeling and Simulation of DNA Replication Process.

, 2013; 8(5): 591 - 602

Guoli Ji, Yong Zeng, Jinting Guan, Qingshun Q. Li, Congting Ye and Yunlong Liu






Review of Stochastic Stability and Analysis Tumor-Immune Systems

, 2013; 8(4): 390 - 400

Chi s Oana, Opri s Dumitru and Concu Riccardo





Most Cited Articles

Application of the Shortest Path Algorithm for the Discovery of Breast Cancer-Related Genes

, 2016; 11(1): 51-58.

Lei Chen, Zhi Hao Xing, Tao Huang, Yang Shu, GuoHua Huang and Hai-Peng Li*


DOI: 10.2174/1574893611666151119220024



Prioritizing Disease Genes by Using Search Engine Algorithm

, 2016; 11(2): 195-202.

Min Li, Ruiqing Zheng, Qi Li, Jianxin Wang*, Fang-Xiang Wu and Zhuohua Zhang


DOI: 10.2174/1574893611666160125220905


Prediction of Linear B-Cell Epitopes with mRMR Feature Selection and Analysis

, 2016; 11(1): 22-31.

Bi-Qing Li, Lu-Lu Zheng, Kai-Yan Feng, Le-Le Hu, Guo-Hua Huang* and Lei Chen*


DOI: 10.2174/1574893611666151119215131



Computer Representations of Bioinformatics Models

, 2016; 11(5): 551-560.

Tomasz Prejzendanc, Szymon Wasik* and Jacek Blazewicz


DOI: 10.2174/1574893610666150928193510


Reconstruction of the Network of Experimentally Validated AMP-Drug Combinations Against Pseudomonas aeruginosa Infections

, 2016; 11(5): 523-530.

Paula Jorge, Martín Pérez-Pérez, Gael Pérez Rodríguez, Florentino Fdez-Riverola, Maria Olivia Pereira and Anália Lourenço*


DOI: 10.2174/1574893611666160617093955





Most Accessed Articles

Inter-Species/Host-Parasite Protein Interaction Predictions Reviewed

, 2018; 13(4): 396-406.

Jumoke Soyemi, Itunnuoluwa Isewon, Jelili Oyelade* and Ezekiel Adebiyi


DOI: 10.2174/1574893613666180108155851


Large-scale Investigation of Long Noncoding RNA Secondary Structures in Human and Mouse

, 2018; 13(5): 450-460.

Xingli Guo, Lin Gao*, Yu Wang, David K.Y. Chiu, Bingbo Wang, Yue Deng and Xiao Wen


DOI: 10.2174/1574893613666180118111019



Cancer Diagnosis Through IsomiR Expression with Machine Learning Method

, 2018; 13(1): 57-63.

Zhijun Liao, Dapeng Li, Xinrui Wang, Lisheng Li and Quan Zou*


DOI: 10.2174/1574893611666160609081155




Application of the Shortest Path Algorithm for the Discovery of Breast Cancer-Related Genes

, 2016; 11(1): 51-58.

Lei Chen, Zhi Hao Xing, Tao Huang, Yang Shu, GuoHua Huang and Hai-Peng Li*


DOI: 10.2174/1574893611666151119220024



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