ISSN: 2212-392X (Online)
ISSN: 1574-8936 (Print)


Volume 11, 5 Issues, 2016


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Current Bioinformatics

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Editor-in-Chief:
Yi-Ping Phoebe Chen
Department of Computer Science and Information Technology
La Trobe University
Melbourne
Australia


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Upcoming Articles (E-Pub Abstracts ahead of Print)

Overcoming the limitation of GWAS platforms using systems biology approach


Budheswar Dehury, Santosh Kumar Behera and Sapna Negi.


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Reverse Vaccinology to computationally screen antigenic epitopes as potential vaccine candidates from Clostridium botulinum strain Hall A.


Mehak Dangi, Bharat Singh and Anil Kumar Chillar.


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A Computational Study of three Frequent Mutations of EGFR and their Effects on Protein Dimer Formation and Non-Small Cell Lung Cancer Drug Resistance


Zhi-Yong Shen.


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A Fast Comparison Algorithm to Measure the Accuracy of Ortholog Clusters


Sunshin Kim and KyuBum Kwack.


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GPU-based Acceleration of ECG Characterization using High-Order Hermite Polynomials


A. Gil, D. G. Márquez, G. Caffarena, A. Iriarte and A Otero.


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Pair-End Inexact Mapping on Hybrid GPU Environments and Out-Of-Core Indexes


José Salavert Torres, Andrés Tomás, Ignacio Medina, Kunihiko Sadakane and Ignacio Blanquer.


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AutoFlow, a Versatile Workflow Engine Illustrated by Assembling an Optimised de novo Transcriptome for a Non-Model Species, such as Faba Bean (Vicia faba)


Pedro Seoane, Sara Ocana, Rosario Carmona, Rocío Bautista, Eva Madrid, Ana M. Torres and M Gonzalo Claros.


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Chaperone Therapy: New Molecular Therapy for Protein Misfolding Diseases with Brain Dysfunction


Yoshiyuki Suzuki, Kousaku Ohno and Aya Narita.


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Enhancing Scoring Performance of Docking-Based Virtual Screening through Machine Learning


Cândida G. Silva, Carlos J. V. Simoes, Pedro Carreirasd and Rui M M Brito.


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GPU Acceleration of an Entropy-based Model to Quantify Epistatic Interactions between SNPs


Carlos Riveros, Manuel Ujaldón and Pablo Moscato.


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ECMSRC: A Sparse Learning Approach for the Prediction of Extracellular Matrix Proteins


Imran Naseem, Shujaat Khan, Roberto Togneri and Mohammed Bennamoun.


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Content-Based Search on Time-Series Microarray Databases using Cluster-Based Fingerprints


Esma Erguner Ozkoc and Hasan Ogulc.


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In Silico Study of Ethylene Biosynthesis: Seeking new Effectors of 3 ACC Synthase and ACC Oxidase


Nada Ayadi, Sarra Aloui, Rabeb Shaiek, Oussama Rokbani, Faten Raboud and Sami Fattouch.


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A Comprehensive Analysis of Sequence Alignment Algorithms for Long-Read Sequencing


Yu Zhang.


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Functional Prediction: Gene Filtering based on Multivariate Techniques


Francisco Torres-Avil´es, Rosa Monta˜no and Liliana L'opez-Kleine.


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A Novel Method for Better Bacterial Genome Assembly from Illumina data


Peixiang Ni, Wenkui Dai, Yongfeng Liu, Zhenyu Yang, Tao Zhou, Shuqing Liang, Tong Wang, Jing Xu and Yun Zhao.


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A Review of Advances on Computational Methods for Identifying the MicroRNAs Targets


Chenghua Li.


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Genomic Islands of Mannheimia Haemolytica – In Silico Analysis


Relangi Tulasi Rao and Kannan Jayakumar.


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Computer Representations of Bioinformatics Models


Tomasz Prejzendan, Szymon Wasik and Jacek Blazewicz.


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Evaluation of Selected DNA Spectral Analysis-Based Gene Prediction Techniques


Sajid A. Marhon and Stefan C Kremer.


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A Review of Gene Selection Tools in Classifying Cancer Microarray Data


Tham Wen Shi, Wong Sou Kah, Mohd Saberi Mohamad, Kohbalan Moorthy, Safaai Deris, Muhammad Farhan Sjaugi, Sigeru Omatu, Juan Manuel Corchado and Shahreen Kasim.


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Amyloid Motif Prediction Using Ensemble Approach


Smitha Sunil Kumaran Nair.


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State Grammar and Deep Pushdown Automata for Biological Sequences of Nucleic Acids


Ajay Kumar.


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A Hybrid Binary Cuckoo Search and Genetic Algorithm for Feature Selection in Type-2 Diabetes


R RRajalaxmia.


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HSS-Bin: an Unsupervised Metagenomic Binning Method Based on Hybrid Sequence Feature Recognition and Spectral Clustering


Xiao Ding, Chang-Chang Cao, Xu-Ying Liu, Fu-Dong Cheng, Xing Luo and Xiao Sun.


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Application of the Enhanced Replacement Method and Ensemble Learning for the Prediction of BCRP/ABCG2 Substrates


Melisa E. Gantner, Lucas N. Alberca, Andrew G. Mercader, Luis E. Bruno-Blanch and Alan Talevia.


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Predicating Candidate Cancer-Associated Genes in the Human Signalling Network using Centrality


Xueming Liu and Linqiang Pan.


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Identifying Key Regulator Genes for Tuberculosis by Differential Co-expression Analysis of Gene Expression Profiling


Jingming Liu, Wei Wang, Joy Fleming, Lijun Bi, Mengqiu Gao and Chuanyou Li.


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VFP: a Visual Algorithm for Predicting Gene Fusion in RNA-Seq Data


Ye Yang and Juan Liu.


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Fast and Practical Algorithms for Searching the Gapped Palindromes


Shivika Gupta, Rajesh Prasad and Sunita Yadav.


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Reverse Vaccinology: An Epitope Based Approach to Design Vaccines


Mehak Dangi, Bharat Singh and Anil Kumar Chhillar.


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A Classification Method for Microarrays Based on Diversity


Xubo Wang, Xiangxiang Zeng, Ying Ju, Yi Jiang, Zhujin Zhang and Wenqiang Chen.


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Intelligent Methodology Development in Computational Biology


Hong-Bin Shen.


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Towards an Experimental and Systems Biology Framework for Cancer Cell Therapeutics


Petar M Mitrasinovic.


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Comparative Genomics and Systems Biology of Malaria Parasites Plasmodium


Hong Cai, Zhan Zhou, Jianying Gu and Yufeng Wang.


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Crimean- Congo hemorrhagic fever virus: Strategies to combat with an emerging threat to human


Pratap S, Narwal M, Dev A, Dhindwal S, Tomar S and Kumar P.


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Genome To Vaccinome: Role of Bioinformatics, Immunoinformatics & Comparative Genomics


Urmila Kulkarni- Kale, Vaishali Waman, Snehal Raskar, Swati Mehta and Smita Saxena.


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Experimental and computational challenges from array-based to sequence-based ChIP techniques


Xun Lan and Victor X Jin.


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Towards creating complete proteomic structural databases of whole organisms


B. Jayaram and Priyanka Dhingra.


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Machine Learning Sequence Classification Techniques: Application To Cysteine Protease Cleavage Prediction


David A. duVerle and Hiroshi Mamitsuka.


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Using Network-based Approaches to Predict Ligands of Orphan Nuclear Receptors


Zhernan Jiang, Ran Tao, Lei Du, Weiming Yu and Junxiang Wang.


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Can Bioinformatic Methods Inform Us about the Molecular Evolution of Different Human Caspases?


Jinny Tomar, Vishnu Kumar Gera and Chiranjib Chakraborty.


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Conserved Domains, Residues, WebLogo and Active Sites of Caspase-Cascades Related to Apoptotic Signaling Pathway


Chiranjib Chakraborty, Jinny Tomar and VK Gera.


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Structure and Function of Enzymes of Shikimate Pathway


Aditya Dev, Satya Tapas, Shivendra Pratap and Pravindra Kumar.


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Recent Developments and Prospects for Influenza M2 Ion Channel Inhibitors That Circumvent Amantadine Resistance


Petar M Mitrasinovic.


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Recent progress of molecular docking simulations applied to development of drugs


Linus Santana Azevedo, Fernanda Pretto Moraes, Mariana Morrone Xavier, Eduarda Ozório Pantoja, Bianca Villavicencio, Jana Aline Finck, Audrey Menegaz Proença, Kelen Beiestorf Rocha and Walter Filgueira de Azevedo Jr.


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Steered Molecular Dynamics - a Promising Tool for Drug Design


Mai Suan Li and Binh Khanh Mai.


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Editorial: Contemporary Trends in Bioinformatics Relevant for Some Important Biomedical Problems


Petar M Mitrasinovic.


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